Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18480

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18475 and CSW01_18480 are separated by 234 nucleotidesCSW01_18480 and CSW01_18485 are separated by 128 nucleotides CSW01_18475: CSW01_18475 - D-alanyl-D-alanine endopeptidase, at 819,402 to 820,352 _18475 CSW01_18480: CSW01_18480 - PLP-dependent aminotransferase family protein, at 820,587 to 822,008 _18480 CSW01_18485: CSW01_18485 - cytochrome d terminal oxidase subunit 1, at 822,137 to 823,729 _18485 Position (kb) 820 821 822 823Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 819.757 kb on + strand, within CSW01_18475at 819.781 kb on + strand, within CSW01_18475at 819.789 kb on - strand, within CSW01_18475at 819.846 kb on - strand, within CSW01_18475at 819.846 kb on - strand, within CSW01_18475at 819.859 kb on - strand, within CSW01_18475at 820.137 kb on + strand, within CSW01_18475at 820.171 kb on - strand, within CSW01_18475at 820.171 kb on - strand, within CSW01_18475at 820.219 kb on - strand, within CSW01_18475at 820.265 kb on + strandat 820.273 kb on - strandat 820.320 kb on - strandat 820.382 kb on - strandat 820.513 kb on + strandat 820.559 kb on - strandat 820.726 kb on - strandat 820.926 kb on - strand, within CSW01_18480at 820.927 kb on + strand, within CSW01_18480at 820.969 kb on + strand, within CSW01_18480at 820.977 kb on - strand, within CSW01_18480at 821.222 kb on + strand, within CSW01_18480at 821.230 kb on - strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.280 kb on + strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.288 kb on - strand, within CSW01_18480at 821.361 kb on - strand, within CSW01_18480at 821.381 kb on + strand, within CSW01_18480at 821.397 kb on + strand, within CSW01_18480at 821.505 kb on - strand, within CSW01_18480at 821.562 kb on - strand, within CSW01_18480at 821.805 kb on - strand, within CSW01_18480at 821.807 kb on + strand, within CSW01_18480at 821.815 kb on - strand, within CSW01_18480at 821.897 kb on + strandat 821.968 kb on + strandat 821.968 kb on + strandat 821.974 kb on - strandat 822.134 kb on - strandat 822.226 kb on - strandat 822.233 kb on - strandat 822.304 kb on - strand, within CSW01_18485at 822.510 kb on + strand, within CSW01_18485at 822.510 kb on + strand, within CSW01_18485at 822.526 kb on - strand, within CSW01_18485at 822.541 kb on + strand, within CSW01_18485at 822.620 kb on + strand, within CSW01_18485at 822.623 kb on - strand, within CSW01_18485at 822.623 kb on - strand, within CSW01_18485at 822.655 kb on - strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.691 kb on + strand, within CSW01_18485at 822.948 kb on - strand, within CSW01_18485at 822.967 kb on - strand, within CSW01_18485

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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819,757 + CSW01_18475 0.37 -1.0
819,781 + CSW01_18475 0.40 +0.9
819,789 - CSW01_18475 0.41 +0.7
819,846 - CSW01_18475 0.47 -0.6
819,846 - CSW01_18475 0.47 +0.5
819,859 - CSW01_18475 0.48 +2.0
820,137 + CSW01_18475 0.77 -2.1
820,171 - CSW01_18475 0.81 -1.9
820,171 - CSW01_18475 0.81 -0.7
820,219 - CSW01_18475 0.86 -1.3
820,265 + -2.4
820,273 - -3.3
820,320 - -0.5
820,382 - -4.1
820,513 + -1.7
820,559 - +0.7
820,726 - +2.0
820,926 - CSW01_18480 0.24 -2.3
820,927 + CSW01_18480 0.24 +0.4
820,969 + CSW01_18480 0.27 -3.4
820,977 - CSW01_18480 0.27 +0.1
821,222 + CSW01_18480 0.45 -0.2
821,230 - CSW01_18480 0.45 -2.2
821,280 + CSW01_18480 0.49 +0.2
821,280 + CSW01_18480 0.49 -0.7
821,288 - CSW01_18480 0.49 +3.1
821,288 - CSW01_18480 0.49 -0.6
821,288 - CSW01_18480 0.49 -0.6
821,288 - CSW01_18480 0.49 -0.4
821,361 - CSW01_18480 0.54 -0.3
821,381 + CSW01_18480 0.56 +0.2
821,397 + CSW01_18480 0.57 -0.6
821,505 - CSW01_18480 0.65 -0.4
821,562 - CSW01_18480 0.69 +0.7
821,805 - CSW01_18480 0.86 +0.1
821,807 + CSW01_18480 0.86 -1.8
821,815 - CSW01_18480 0.86 -0.5
821,897 + -1.1
821,968 + -2.2
821,968 + +1.0
821,974 - -1.4
822,134 - +1.6
822,226 - -1.1
822,233 - -2.6
822,304 - CSW01_18485 0.10 -0.2
822,510 + CSW01_18485 0.23 -2.5
822,510 + CSW01_18485 0.23 +0.7
822,526 - CSW01_18485 0.24 -1.6
822,541 + CSW01_18485 0.25 -2.7
822,620 + CSW01_18485 0.30 +2.0
822,623 - CSW01_18485 0.31 +0.5
822,623 - CSW01_18485 0.31 -1.1
822,655 - CSW01_18485 0.33 -1.3
822,691 + CSW01_18485 0.35 -2.4
822,691 + CSW01_18485 0.35 +2.1
822,691 + CSW01_18485 0.35 +1.4
822,948 - CSW01_18485 0.51 -1.2
822,967 - CSW01_18485 0.52 -0.8

Or see this region's nucleotide sequence