Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18270

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18265 and CSW01_18270 overlap by 4 nucleotidesCSW01_18270 and CSW01_18275 are separated by 35 nucleotides CSW01_18265: CSW01_18265 - aspartate kinase, at 766,236 to 767,660 _18265 CSW01_18270: CSW01_18270 - L-ectoine synthase, at 767,657 to 768,073 _18270 CSW01_18275: CSW01_18275 - diaminobutyrate--2-oxoglutarate transaminase, at 768,109 to 769,374 _18275 Position (kb) 767 768 769Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 766.686 kb on + strand, within CSW01_18265at 766.700 kb on + strand, within CSW01_18265at 766.714 kb on + strand, within CSW01_18265at 766.719 kb on + strand, within CSW01_18265at 766.771 kb on - strand, within CSW01_18265at 766.839 kb on - strand, within CSW01_18265at 766.897 kb on - strand, within CSW01_18265at 766.938 kb on + strand, within CSW01_18265at 766.952 kb on - strand, within CSW01_18265at 766.973 kb on + strand, within CSW01_18265at 766.978 kb on + strand, within CSW01_18265at 766.986 kb on - strand, within CSW01_18265at 766.986 kb on - strand, within CSW01_18265at 767.037 kb on + strand, within CSW01_18265at 767.045 kb on - strand, within CSW01_18265at 767.202 kb on + strand, within CSW01_18265at 767.229 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.234 kb on - strand, within CSW01_18265at 767.259 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.426 kb on + strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.434 kb on - strand, within CSW01_18265at 767.513 kb on + strand, within CSW01_18265at 767.573 kb on + strandat 767.573 kb on + strandat 767.603 kb on - strandat 767.647 kb on + strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.655 kb on - strandat 767.689 kb on - strandat 767.694 kb on - strandat 767.704 kb on + strand, within CSW01_18270at 767.830 kb on - strand, within CSW01_18270at 767.843 kb on - strand, within CSW01_18270at 768.052 kb on + strandat 768.052 kb on + strandat 768.106 kb on - strandat 768.135 kb on + strandat 768.313 kb on + strand, within CSW01_18275at 768.377 kb on - strand, within CSW01_18275at 768.379 kb on - strand, within CSW01_18275at 768.383 kb on + strand, within CSW01_18275at 768.389 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.542 kb on + strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.550 kb on - strand, within CSW01_18275at 768.555 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.560 kb on - strand, within CSW01_18275at 768.561 kb on - strand, within CSW01_18275at 768.568 kb on - strand, within CSW01_18275at 768.610 kb on - strand, within CSW01_18275at 768.663 kb on - strand, within CSW01_18275at 768.748 kb on + strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.771 kb on - strand, within CSW01_18275at 768.778 kb on + strand, within CSW01_18275at 768.781 kb on - strand, within CSW01_18275at 768.867 kb on - strand, within CSW01_18275at 768.954 kb on + strand, within CSW01_18275at 768.990 kb on + strand, within CSW01_18275at 769.000 kb on + strand, within CSW01_18275at 769.021 kb on + strand, within CSW01_18275

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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766,686 + CSW01_18265 0.32 -2.4
766,700 + CSW01_18265 0.33 +0.2
766,714 + CSW01_18265 0.34 -0.4
766,719 + CSW01_18265 0.34 -1.0
766,771 - CSW01_18265 0.38 -0.3
766,839 - CSW01_18265 0.42 +0.8
766,897 - CSW01_18265 0.46 +0.2
766,938 + CSW01_18265 0.49 -2.0
766,952 - CSW01_18265 0.50 -1.7
766,973 + CSW01_18265 0.52 +0.9
766,978 + CSW01_18265 0.52 -2.2
766,986 - CSW01_18265 0.53 -1.8
766,986 - CSW01_18265 0.53 -2.0
767,037 + CSW01_18265 0.56 -0.7
767,045 - CSW01_18265 0.57 -0.4
767,202 + CSW01_18265 0.68 +1.3
767,229 - CSW01_18265 0.70 +0.7
767,234 - CSW01_18265 0.70 +0.3
767,234 - CSW01_18265 0.70 -1.4
767,259 + CSW01_18265 0.72 +1.0
767,426 + CSW01_18265 0.84 -0.2
767,426 + CSW01_18265 0.84 +2.8
767,426 + CSW01_18265 0.84 -1.4
767,426 + CSW01_18265 0.84 +0.7
767,426 + CSW01_18265 0.84 +3.2
767,426 + CSW01_18265 0.84 +0.0
767,426 + CSW01_18265 0.84 +0.9
767,426 + CSW01_18265 0.84 -1.9
767,434 - CSW01_18265 0.84 -3.2
767,434 - CSW01_18265 0.84 +1.3
767,434 - CSW01_18265 0.84 +0.1
767,434 - CSW01_18265 0.84 -0.3
767,434 - CSW01_18265 0.84 -1.9
767,434 - CSW01_18265 0.84 +1.2
767,434 - CSW01_18265 0.84 +0.5
767,434 - CSW01_18265 0.84 -0.6
767,434 - CSW01_18265 0.84 -2.0
767,434 - CSW01_18265 0.84 +1.0
767,513 + CSW01_18265 0.90 -0.7
767,573 + -3.0
767,573 + -0.2
767,603 - -0.2
767,647 + -1.0
767,655 - +0.1
767,655 - +0.4
767,655 - -1.1
767,689 - -0.0
767,694 - -3.9
767,704 + CSW01_18270 0.11 -2.2
767,830 - CSW01_18270 0.41 -3.1
767,843 - CSW01_18270 0.45 +0.2
768,052 + -2.3
768,052 + -0.3
768,106 - -0.8
768,135 + -2.0
768,313 + CSW01_18275 0.16 -2.0
768,377 - CSW01_18275 0.21 -1.3
768,379 - CSW01_18275 0.21 -0.4
768,383 + CSW01_18275 0.22 -1.2
768,389 + CSW01_18275 0.22 -1.3
768,542 + CSW01_18275 0.34 -0.6
768,542 + CSW01_18275 0.34 +0.6
768,542 + CSW01_18275 0.34 -1.2
768,542 + CSW01_18275 0.34 -2.2
768,542 + CSW01_18275 0.34 -1.8
768,542 + CSW01_18275 0.34 +0.4
768,542 + CSW01_18275 0.34 -0.9
768,542 + CSW01_18275 0.34 -1.7
768,542 + CSW01_18275 0.34 +0.3
768,542 + CSW01_18275 0.34 -2.4
768,550 - CSW01_18275 0.35 -0.1
768,550 - CSW01_18275 0.35 -0.0
768,550 - CSW01_18275 0.35 +1.2
768,550 - CSW01_18275 0.35 -0.8
768,550 - CSW01_18275 0.35 -0.4
768,550 - CSW01_18275 0.35 +1.3
768,550 - CSW01_18275 0.35 +1.3
768,550 - CSW01_18275 0.35 -0.1
768,550 - CSW01_18275 0.35 +0.7
768,550 - CSW01_18275 0.35 +1.0
768,555 - CSW01_18275 0.35 -1.0
768,560 - CSW01_18275 0.36 -3.5
768,560 - CSW01_18275 0.36 -2.3
768,561 - CSW01_18275 0.36 +0.7
768,568 - CSW01_18275 0.36 +1.6
768,610 - CSW01_18275 0.40 +0.7
768,663 - CSW01_18275 0.44 +0.2
768,748 + CSW01_18275 0.50 -0.5
768,771 - CSW01_18275 0.52 -2.6
768,771 - CSW01_18275 0.52 +1.1
768,778 + CSW01_18275 0.53 -0.0
768,781 - CSW01_18275 0.53 -2.1
768,867 - CSW01_18275 0.60 +0.3
768,954 + CSW01_18275 0.67 -1.7
768,990 + CSW01_18275 0.70 -1.9
769,000 + CSW01_18275 0.70 -0.5
769,021 + CSW01_18275 0.72 +1.2

Or see this region's nucleotide sequence