Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18150

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18145 and CSW01_18150 are separated by 237 nucleotidesCSW01_18150 and CSW01_18155 are separated by 195 nucleotides CSW01_18145: CSW01_18145 - resolvase, at 736,235 to 737,191 _18145 CSW01_18150: CSW01_18150 - transcription initiation factor TFIIIB, at 737,429 to 737,650 _18150 CSW01_18155: CSW01_18155 - HAD family hydrolase, at 737,846 to 738,526 _18155 Position (kb) 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 736.429 kb on + strand, within CSW01_18145at 736.439 kb on + strand, within CSW01_18145at 736.444 kb on + strand, within CSW01_18145at 736.482 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.491 kb on - strand, within CSW01_18145at 736.533 kb on + strand, within CSW01_18145at 736.541 kb on - strand, within CSW01_18145at 736.542 kb on + strand, within CSW01_18145at 736.581 kb on + strand, within CSW01_18145at 736.598 kb on + strand, within CSW01_18145at 736.606 kb on - strand, within CSW01_18145at 736.627 kb on - strand, within CSW01_18145at 736.650 kb on - strand, within CSW01_18145at 736.650 kb on - strand, within CSW01_18145at 736.704 kb on + strand, within CSW01_18145at 736.730 kb on - strand, within CSW01_18145at 736.730 kb on - strand, within CSW01_18145at 736.739 kb on + strand, within CSW01_18145at 736.742 kb on - strand, within CSW01_18145at 736.841 kb on + strand, within CSW01_18145at 736.849 kb on - strand, within CSW01_18145at 736.849 kb on - strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.873 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.898 kb on + strand, within CSW01_18145at 736.906 kb on - strand, within CSW01_18145at 736.928 kb on + strand, within CSW01_18145at 736.979 kb on - strand, within CSW01_18145at 737.021 kb on + strand, within CSW01_18145at 737.021 kb on + strand, within CSW01_18145at 737.034 kb on - strand, within CSW01_18145at 737.079 kb on + strand, within CSW01_18145at 737.094 kb on + strand, within CSW01_18145at 737.333 kb on + strandat 737.371 kb on + strandat 737.383 kb on + strandat 737.396 kb on - strandat 737.401 kb on - strandat 737.401 kb on - strandat 737.484 kb on - strand, within CSW01_18150at 737.773 kb on + strandat 737.882 kb on - strandat 737.896 kb on + strandat 737.959 kb on + strand, within CSW01_18155at 737.959 kb on + strand, within CSW01_18155at 737.989 kb on - strand, within CSW01_18155at 738.136 kb on + strand, within CSW01_18155at 738.141 kb on + strand, within CSW01_18155at 738.224 kb on - strand, within CSW01_18155at 738.312 kb on - strand, within CSW01_18155at 738.407 kb on + strand, within CSW01_18155at 738.455 kb on + strand, within CSW01_18155at 738.472 kb on + strandat 738.480 kb on - strandat 738.491 kb on + strandat 738.515 kb on + strandat 738.551 kb on - strandat 738.551 kb on - strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strandat 738.553 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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736,429 + CSW01_18145 0.20 +0.4
736,439 + CSW01_18145 0.21 +0.8
736,444 + CSW01_18145 0.22 -2.6
736,482 - CSW01_18145 0.26 -0.2
736,491 - CSW01_18145 0.27 -2.2
736,491 - CSW01_18145 0.27 -2.1
736,491 - CSW01_18145 0.27 +1.0
736,533 + CSW01_18145 0.31 +0.4
736,541 - CSW01_18145 0.32 +0.9
736,542 + CSW01_18145 0.32 +0.9
736,581 + CSW01_18145 0.36 +0.9
736,598 + CSW01_18145 0.38 -0.6
736,606 - CSW01_18145 0.39 -2.4
736,627 - CSW01_18145 0.41 -0.8
736,650 - CSW01_18145 0.43 -1.5
736,650 - CSW01_18145 0.43 +0.0
736,704 + CSW01_18145 0.49 -0.6
736,730 - CSW01_18145 0.52 +0.3
736,730 - CSW01_18145 0.52 -1.6
736,739 + CSW01_18145 0.53 +0.4
736,742 - CSW01_18145 0.53 -1.1
736,841 + CSW01_18145 0.63 -1.8
736,849 - CSW01_18145 0.64 +1.2
736,849 - CSW01_18145 0.64 -0.3
736,873 + CSW01_18145 0.67 -3.0
736,873 + CSW01_18145 0.67 +0.8
736,898 + CSW01_18145 0.69 -1.3
736,898 + CSW01_18145 0.69 -0.8
736,906 - CSW01_18145 0.70 +1.0
736,928 + CSW01_18145 0.72 -2.8
736,979 - CSW01_18145 0.78 -0.2
737,021 + CSW01_18145 0.82 -2.9
737,021 + CSW01_18145 0.82 -2.8
737,034 - CSW01_18145 0.83 -3.6
737,079 + CSW01_18145 0.88 -1.1
737,094 + CSW01_18145 0.90 +0.4
737,333 + +0.4
737,371 + -1.1
737,383 + +0.1
737,396 - -0.1
737,401 - +0.6
737,401 - -0.4
737,484 - CSW01_18150 0.25 -3.6
737,773 + -2.0
737,882 - +0.4
737,896 + +1.6
737,959 + CSW01_18155 0.17 +0.2
737,959 + CSW01_18155 0.17 -0.6
737,989 - CSW01_18155 0.21 -0.2
738,136 + CSW01_18155 0.43 -2.5
738,141 + CSW01_18155 0.43 -2.3
738,224 - CSW01_18155 0.56 -2.0
738,312 - CSW01_18155 0.68 +0.7
738,407 + CSW01_18155 0.82 +2.3
738,455 + CSW01_18155 0.89 -0.4
738,472 + -1.6
738,480 - -0.1
738,491 + -2.0
738,515 + +0.4
738,551 - +0.5
738,551 - -0.5
738,553 + -0.8
738,553 + +1.3
738,553 + +1.3
738,553 + -0.2

Or see this region's nucleotide sequence