Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17915

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17910 and CSW01_17915 overlap by 4 nucleotidesCSW01_17915 and CSW01_17920 overlap by 4 nucleotides CSW01_17910: CSW01_17910 - anaerobic glycerol-3-phosphate dehydrogenase subunit A, at 689,434 to 691,077 _17910 CSW01_17915: CSW01_17915 - anaerobic glycerol-3-phosphate dehydrogenase subunit B, at 691,074 to 692,384 _17915 CSW01_17920: CSW01_17920 - anaerobic glycerol-3-phosphate dehydrogenase subunit C, at 692,381 to 693,622 _17920 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.139 kb on + strand, within CSW01_17910at 690.176 kb on + strand, within CSW01_17910at 690.228 kb on + strand, within CSW01_17910at 690.239 kb on + strand, within CSW01_17910at 690.249 kb on + strand, within CSW01_17910at 690.428 kb on + strand, within CSW01_17910at 690.511 kb on - strand, within CSW01_17910at 690.550 kb on + strand, within CSW01_17910at 690.585 kb on - strand, within CSW01_17910at 690.684 kb on - strand, within CSW01_17910at 690.684 kb on - strand, within CSW01_17910at 690.770 kb on + strand, within CSW01_17910at 690.792 kb on - strand, within CSW01_17910at 690.835 kb on - strand, within CSW01_17910at 690.989 kb on + strandat 690.989 kb on + strandat 690.994 kb on + strandat 691.018 kb on + strandat 691.026 kb on - strandat 691.053 kb on - strandat 691.113 kb on + strandat 691.273 kb on - strand, within CSW01_17915at 691.296 kb on - strand, within CSW01_17915at 691.356 kb on + strand, within CSW01_17915at 691.364 kb on - strand, within CSW01_17915at 691.364 kb on - strand, within CSW01_17915at 691.385 kb on - strand, within CSW01_17915at 691.407 kb on - strand, within CSW01_17915at 691.436 kb on + strand, within CSW01_17915at 691.457 kb on + strand, within CSW01_17915at 691.540 kb on + strand, within CSW01_17915at 691.570 kb on + strand, within CSW01_17915at 691.578 kb on - strand, within CSW01_17915at 691.621 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.631 kb on + strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.639 kb on - strand, within CSW01_17915at 691.724 kb on - strand, within CSW01_17915at 691.855 kb on - strand, within CSW01_17915at 691.965 kb on - strand, within CSW01_17915at 691.971 kb on + strand, within CSW01_17915at 691.977 kb on - strand, within CSW01_17915at 692.023 kb on - strand, within CSW01_17915at 692.028 kb on - strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.052 kb on + strand, within CSW01_17915at 692.055 kb on + strand, within CSW01_17915at 692.070 kb on - strand, within CSW01_17915at 692.127 kb on + strand, within CSW01_17915at 692.184 kb on + strand, within CSW01_17915at 692.259 kb on - strandat 692.267 kb on + strandat 692.275 kb on - strandat 692.298 kb on + strandat 692.306 kb on - strandat 692.339 kb on - strandat 692.365 kb on + strandat 692.378 kb on + strandat 692.378 kb on + strandat 692.385 kb on + strandat 692.386 kb on - strandat 692.408 kb on - strandat 692.421 kb on + strandat 692.456 kb on + strandat 692.458 kb on + strandat 692.458 kb on + strandat 692.464 kb on - strandat 692.464 kb on - strandat 692.466 kb on - strandat 692.496 kb on + strandat 692.506 kb on + strand, within CSW01_17920at 692.511 kb on + strand, within CSW01_17920at 692.541 kb on - strand, within CSW01_17920at 692.589 kb on - strand, within CSW01_17920at 692.681 kb on - strand, within CSW01_17920at 692.752 kb on - strand, within CSW01_17920at 692.799 kb on - strand, within CSW01_17920at 692.815 kb on + strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.823 kb on - strand, within CSW01_17920at 692.993 kb on - strand, within CSW01_17920at 693.091 kb on + strand, within CSW01_17920at 693.114 kb on + strand, within CSW01_17920at 693.135 kb on - strand, within CSW01_17920at 693.136 kb on - strand, within CSW01_17920at 693.137 kb on + strand, within CSW01_17920at 693.145 kb on - strand, within CSW01_17920at 693.198 kb on + strand, within CSW01_17920at 693.206 kb on - strand, within CSW01_17920at 693.279 kb on - strand, within CSW01_17920at 693.308 kb on - strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.345 kb on + strand, within CSW01_17920at 693.355 kb on + strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920at 693.380 kb on - strand, within CSW01_17920

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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690,139 + CSW01_17910 0.43 +1.5
690,176 + CSW01_17910 0.45 -1.3
690,228 + CSW01_17910 0.48 -1.4
690,239 + CSW01_17910 0.49 -2.9
690,249 + CSW01_17910 0.50 +0.4
690,428 + CSW01_17910 0.60 -0.9
690,511 - CSW01_17910 0.66 -0.7
690,550 + CSW01_17910 0.68 -1.2
690,585 - CSW01_17910 0.70 +0.3
690,684 - CSW01_17910 0.76 +0.0
690,684 - CSW01_17910 0.76 +0.8
690,770 + CSW01_17910 0.81 -2.5
690,792 - CSW01_17910 0.83 +0.7
690,835 - CSW01_17910 0.85 -2.1
690,989 + +0.5
690,989 + -1.3
690,994 + -0.5
691,018 + -1.6
691,026 - -0.2
691,053 - -0.5
691,113 + -2.2
691,273 - CSW01_17915 0.15 +0.9
691,296 - CSW01_17915 0.17 -2.6
691,356 + CSW01_17915 0.22 -2.5
691,364 - CSW01_17915 0.22 -1.9
691,364 - CSW01_17915 0.22 +0.3
691,385 - CSW01_17915 0.24 -0.9
691,407 - CSW01_17915 0.25 -2.0
691,436 + CSW01_17915 0.28 +1.2
691,457 + CSW01_17915 0.29 +0.2
691,540 + CSW01_17915 0.36 +1.4
691,570 + CSW01_17915 0.38 +0.9
691,578 - CSW01_17915 0.38 -2.5
691,621 + CSW01_17915 0.42 +1.0
691,631 + CSW01_17915 0.42 +0.5
691,631 + CSW01_17915 0.42 -3.0
691,639 - CSW01_17915 0.43 +1.1
691,639 - CSW01_17915 0.43 +0.1
691,639 - CSW01_17915 0.43 +0.1
691,724 - CSW01_17915 0.50 +0.6
691,855 - CSW01_17915 0.60 +1.0
691,965 - CSW01_17915 0.68 +0.6
691,971 + CSW01_17915 0.68 +1.1
691,977 - CSW01_17915 0.69 +0.5
692,023 - CSW01_17915 0.72 +1.0
692,028 - CSW01_17915 0.73 -0.3
692,052 + CSW01_17915 0.75 -1.1
692,052 + CSW01_17915 0.75 +2.1
692,055 + CSW01_17915 0.75 -2.3
692,070 - CSW01_17915 0.76 -1.3
692,127 + CSW01_17915 0.80 +0.2
692,184 + CSW01_17915 0.85 +2.1
692,259 - +0.8
692,267 + -1.5
692,275 - +0.1
692,298 + -3.1
692,306 - -1.4
692,339 - -1.8
692,365 + -1.5
692,378 + +1.8
692,378 + +0.5
692,385 + -2.1
692,386 - +0.5
692,408 - +0.7
692,421 + +1.0
692,456 + +1.2
692,458 + -3.4
692,458 + -2.4
692,464 - +1.5
692,464 - +0.9
692,466 - -0.5
692,496 + -3.3
692,506 + CSW01_17920 0.10 -1.1
692,511 + CSW01_17920 0.10 -0.3
692,541 - CSW01_17920 0.13 +1.3
692,589 - CSW01_17920 0.17 -0.8
692,681 - CSW01_17920 0.24 -2.2
692,752 - CSW01_17920 0.30 -0.7
692,799 - CSW01_17920 0.34 -0.8
692,815 + CSW01_17920 0.35 +0.7
692,823 - CSW01_17920 0.36 -1.3
692,823 - CSW01_17920 0.36 -1.8
692,993 - CSW01_17920 0.49 -1.6
693,091 + CSW01_17920 0.57 -1.1
693,114 + CSW01_17920 0.59 +2.1
693,135 - CSW01_17920 0.61 -2.3
693,136 - CSW01_17920 0.61 +0.5
693,137 + CSW01_17920 0.61 +0.7
693,145 - CSW01_17920 0.62 -1.9
693,198 + CSW01_17920 0.66 -0.0
693,206 - CSW01_17920 0.66 +1.1
693,279 - CSW01_17920 0.72 +0.6
693,308 - CSW01_17920 0.75 +0.1
693,345 + CSW01_17920 0.78 -3.1
693,345 + CSW01_17920 0.78 -2.3
693,355 + CSW01_17920 0.78 -0.3
693,380 - CSW01_17920 0.80 -1.9
693,380 - CSW01_17920 0.80 +0.1
693,380 - CSW01_17920 0.80 -2.6

Or see this region's nucleotide sequence