Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17875 and CSW01_17880 are separated by 41 nucleotides CSW01_17880 and CSW01_17885 are separated by 187 nucleotides CSW01_17885 and CSW01_17890 overlap by 1 nucleotides CSW01_17890 and CSW01_17895 are separated by 263 nucleotides CSW01_17895 and CSW01_17900 are separated by 80 nucleotides
CSW01_17875: CSW01_17875 - DUF480 domain-containing protein, at 684,136 to 684,786
_17875
CSW01_17880: CSW01_17880 - hypothetical protein, at 684,828 to 685,025
_17880
CSW01_17885: CSW01_17885 - hypothetical protein, at 685,213 to 685,533
_17885
CSW01_17890: CSW01_17890 - hypothetical protein, at 685,533 to 685,682
_17890
CSW01_17895: CSW01_17895 - hypothetical protein, at 685,946 to 686,197
_17895
CSW01_17900: CSW01_17900 - glycerol kinase, at 686,278 to 687,795
_17900
Position (kb) 685
686 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 684.219 kb on + strand, within CSW01_17875 at 684.271 kb on + strand, within CSW01_17875 at 684.279 kb on - strand, within CSW01_17875 at 684.305 kb on + strand, within CSW01_17875 at 684.311 kb on + strand, within CSW01_17875 at 684.378 kb on - strand, within CSW01_17875 at 684.417 kb on + strand, within CSW01_17875 at 684.418 kb on - strand, within CSW01_17875 at 684.456 kb on - strand, within CSW01_17875 at 684.465 kb on + strand, within CSW01_17875 at 684.473 kb on - strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.597 kb on + strand, within CSW01_17875 at 684.616 kb on + strand, within CSW01_17875 at 684.640 kb on + strand, within CSW01_17875 at 684.757 kb on + strand at 684.801 kb on - strand at 684.834 kb on - strand at 684.925 kb on - strand, within CSW01_17880 at 684.970 kb on + strand, within CSW01_17880 at 685.031 kb on + strand at 685.033 kb on + strand at 685.039 kb on + strand at 685.041 kb on - strand at 685.170 kb on + strand at 685.178 kb on - strand at 685.210 kb on + strand at 685.210 kb on + strand at 685.218 kb on - strand at 685.313 kb on - strand, within CSW01_17885 at 685.313 kb on - strand, within CSW01_17885 at 685.326 kb on + strand, within CSW01_17885 at 685.567 kb on - strand, within CSW01_17890 at 685.755 kb on - strand at 685.826 kb on + strand at 685.826 kb on + strand at 685.863 kb on + strand at 685.909 kb on + strand at 685.909 kb on + strand at 685.918 kb on + strand at 685.927 kb on - strand at 686.089 kb on + strand, within CSW01_17895 at 686.115 kb on + strand, within CSW01_17895 at 686.115 kb on + strand, within CSW01_17895 at 686.123 kb on - strand, within CSW01_17895 at 686.301 kb on - strand at 686.301 kb on - strand at 686.303 kb on + strand at 686.308 kb on + strand at 686.313 kb on + strand at 686.316 kb on - strand at 686.316 kb on - strand at 686.332 kb on + strand at 686.332 kb on + strand at 686.340 kb on - strand at 686.379 kb on + strand at 686.379 kb on + strand at 686.379 kb on + strand at 686.387 kb on - strand at 686.418 kb on + strand at 686.470 kb on - strand, within CSW01_17900 at 686.490 kb on + strand, within CSW01_17900 at 686.525 kb on + strand, within CSW01_17900 at 686.525 kb on + strand, within CSW01_17900 at 686.533 kb on - strand, within CSW01_17900
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 684,219 + CSW01_17875 0.13 +0.7 684,271 + CSW01_17875 0.21 -2.2 684,279 - CSW01_17875 0.22 +2.3 684,305 + CSW01_17875 0.26 -1.4 684,311 + CSW01_17875 0.27 -3.5 684,378 - CSW01_17875 0.37 -1.9 684,417 + CSW01_17875 0.43 -2.2 684,418 - CSW01_17875 0.43 +0.9 684,456 - CSW01_17875 0.49 -1.3 684,465 + CSW01_17875 0.51 +0.5 684,473 - CSW01_17875 0.52 -0.8 684,597 + CSW01_17875 0.71 -2.6 684,597 + CSW01_17875 0.71 -1.3 684,616 + CSW01_17875 0.74 +1.0 684,640 + CSW01_17875 0.77 -3.0 684,757 + -1.1 684,801 - -1.1 684,834 - -0.2 684,925 - CSW01_17880 0.49 +0.2 684,970 + CSW01_17880 0.72 +2.3 685,031 + -0.2 685,033 + +0.9 685,039 + +1.8 685,041 - -0.4 685,170 + -3.1 685,178 - -2.5 685,210 + -0.1 685,210 + -1.9 685,218 - +1.5 685,313 - CSW01_17885 0.31 +0.9 685,313 - CSW01_17885 0.31 -0.7 685,326 + CSW01_17885 0.35 -2.2 685,567 - CSW01_17890 0.23 -3.4 685,755 - -2.6 685,826 + +0.8 685,826 + -0.3 685,863 + -0.5 685,909 + -3.4 685,909 + +1.8 685,918 + -1.9 685,927 - +2.6 686,089 + CSW01_17895 0.57 -2.8 686,115 + CSW01_17895 0.67 -0.9 686,115 + CSW01_17895 0.67 +0.7 686,123 - CSW01_17895 0.70 -0.4 686,301 - +1.0 686,301 - -1.0 686,303 + -1.6 686,308 + +0.1 686,313 + +0.6 686,316 - -0.7 686,316 - -0.3 686,332 + -0.8 686,332 + -0.4 686,340 - +0.6 686,379 + -1.1 686,379 + -0.5 686,379 + +0.4 686,387 - -0.9 686,418 + -0.1 686,470 - CSW01_17900 0.13 -0.8 686,490 + CSW01_17900 0.14 +1.2 686,525 + CSW01_17900 0.16 -2.9 686,525 + CSW01_17900 0.16 +1.0 686,533 - CSW01_17900 0.17 +0.1
Or see this region's nucleotide sequence