Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17825 and CSW01_17830 are separated by 698 nucleotides CSW01_17830 and CSW01_17835 are separated by 202 nucleotides CSW01_17835 and CSW01_17840 are separated by 40 nucleotides CSW01_17840 and CSW01_17845 are separated by 37 nucleotides
CSW01_17825: CSW01_17825 - hypothetical protein, at 673,550 to 675,379
_17825
CSW01_17830: CSW01_17830 - hypothetical protein, at 676,078 to 676,383
_17830
CSW01_17835: CSW01_17835 - hypothetical protein, at 676,586 to 676,984
_17835
CSW01_17840: CSW01_17840 - hypothetical protein, at 677,025 to 677,177
_17840
CSW01_17845: CSW01_17845 - hypothetical protein, at 677,215 to 677,754
_17845
Position (kb) 676
677 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 675.200 kb on - strand at 675.305 kb on - strand at 675.349 kb on - strand at 675.600 kb on - strand at 675.635 kb on + strand at 675.834 kb on + strand at 675.834 kb on + strand at 675.834 kb on + strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.842 kb on - strand at 675.943 kb on + strand at 675.961 kb on + strand at 675.983 kb on - strand at 675.993 kb on + strand at 676.008 kb on - strand at 676.070 kb on + strand at 676.100 kb on - strand at 676.111 kb on + strand, within CSW01_17830 at 676.241 kb on + strand, within CSW01_17830 at 676.273 kb on + strand, within CSW01_17830 at 676.275 kb on - strand, within CSW01_17830 at 676.415 kb on + strand at 676.531 kb on + strand at 676.531 kb on + strand at 676.539 kb on - strand at 676.764 kb on + strand, within CSW01_17835 at 676.824 kb on + strand, within CSW01_17835 at 676.832 kb on - strand, within CSW01_17835 at 676.905 kb on + strand, within CSW01_17835 at 676.998 kb on - strand at 677.117 kb on - strand, within CSW01_17840 at 677.270 kb on + strand, within CSW01_17845 at 677.270 kb on + strand, within CSW01_17845 at 677.270 kb on + strand, within CSW01_17845 at 677.278 kb on - strand, within CSW01_17845 at 677.278 kb on - strand, within CSW01_17845 at 677.285 kb on + strand, within CSW01_17845 at 677.293 kb on - strand, within CSW01_17845 at 677.293 kb on - strand, within CSW01_17845 at 677.357 kb on + strand, within CSW01_17845
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 675,200 - +0.5 675,305 - -0.9 675,349 - +1.4 675,600 - -2.8 675,635 + +3.2 675,834 + +1.0 675,834 + +1.4 675,834 + +1.0 675,842 - -1.3 675,842 - -1.4 675,842 - -1.1 675,842 - -2.3 675,943 + +0.7 675,961 + +1.1 675,983 - -1.1 675,993 + -0.3 676,008 - +0.8 676,070 + +0.6 676,100 - +0.6 676,111 + CSW01_17830 0.11 +0.2 676,241 + CSW01_17830 0.53 -2.9 676,273 + CSW01_17830 0.64 -2.3 676,275 - CSW01_17830 0.64 -2.8 676,415 + +1.1 676,531 + +0.7 676,531 + -3.0 676,539 - -2.3 676,764 + CSW01_17835 0.45 +1.2 676,824 + CSW01_17835 0.60 -2.5 676,832 - CSW01_17835 0.62 -1.6 676,905 + CSW01_17835 0.80 +1.4 676,998 - +0.4 677,117 - CSW01_17840 0.60 -2.8 677,270 + CSW01_17845 0.10 -2.3 677,270 + CSW01_17845 0.10 +0.7 677,270 + CSW01_17845 0.10 -3.8 677,278 - CSW01_17845 0.12 +1.0 677,278 - CSW01_17845 0.12 +1.8 677,285 + CSW01_17845 0.13 -4.5 677,293 - CSW01_17845 0.14 +0.2 677,293 - CSW01_17845 0.14 +1.3 677,357 + CSW01_17845 0.26 -3.4
Or see this region's nucleotide sequence