Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17765

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17760 and CSW01_17765 are separated by 186 nucleotidesCSW01_17765 and CSW01_17770 are separated by 9 nucleotidesCSW01_17770 and CSW01_17775 overlap by 4 nucleotides CSW01_17760: CSW01_17760 - DNA helicase IV, at 657,939 to 660,002 _17760 CSW01_17765: CSW01_17765 - TIGR01666 family membrane protein, at 660,189 to 662,366 _17765 CSW01_17770: CSW01_17770 - two-component sensor histidine kinase, at 662,376 to 663,323 _17770 CSW01_17775: CSW01_17775 - guanylate cyclase, at 663,320 to 663,895 _17775 Position (kb) 660 661 662 663Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 659.234 kb on - strand, within CSW01_17760at 659.325 kb on + strand, within CSW01_17760at 659.333 kb on - strand, within CSW01_17760at 659.354 kb on - strand, within CSW01_17760at 659.376 kb on - strand, within CSW01_17760at 659.383 kb on + strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.391 kb on - strand, within CSW01_17760at 659.427 kb on + strand, within CSW01_17760at 659.470 kb on + strand, within CSW01_17760at 659.586 kb on + strand, within CSW01_17760at 659.591 kb on + strand, within CSW01_17760at 659.770 kb on + strand, within CSW01_17760at 659.826 kb on + strandat 659.856 kb on + strandat 660.012 kb on - strandat 660.055 kb on - strandat 660.150 kb on + strandat 660.165 kb on + strandat 660.258 kb on + strandat 660.258 kb on + strandat 660.266 kb on - strandat 660.266 kb on - strandat 660.266 kb on - strandat 660.287 kb on + strandat 660.311 kb on + strandat 660.455 kb on + strand, within CSW01_17765at 660.578 kb on - strand, within CSW01_17765at 660.592 kb on - strand, within CSW01_17765at 660.608 kb on + strand, within CSW01_17765at 660.658 kb on - strand, within CSW01_17765at 660.688 kb on - strand, within CSW01_17765at 660.818 kb on + strand, within CSW01_17765at 660.840 kb on + strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.849 kb on - strand, within CSW01_17765at 660.859 kb on - strand, within CSW01_17765at 660.859 kb on - strand, within CSW01_17765at 660.872 kb on - strand, within CSW01_17765at 660.874 kb on + strand, within CSW01_17765at 660.882 kb on - strand, within CSW01_17765at 660.887 kb on - strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765at 660.888 kb on + strand, within CSW01_17765at 661.081 kb on + strand, within CSW01_17765at 661.089 kb on - strand, within CSW01_17765at 661.150 kb on + strand, within CSW01_17765at 661.172 kb on - strand, within CSW01_17765at 661.263 kb on + strand, within CSW01_17765at 661.292 kb on + strand, within CSW01_17765at 661.297 kb on + strand, within CSW01_17765at 661.298 kb on + strand, within CSW01_17765at 661.312 kb on + strand, within CSW01_17765at 661.312 kb on + strand, within CSW01_17765at 661.319 kb on - strand, within CSW01_17765at 661.319 kb on - strand, within CSW01_17765at 661.377 kb on + strand, within CSW01_17765at 661.402 kb on + strand, within CSW01_17765at 661.402 kb on + strand, within CSW01_17765at 661.565 kb on - strand, within CSW01_17765at 661.568 kb on - strand, within CSW01_17765at 661.576 kb on + strand, within CSW01_17765at 661.672 kb on + strand, within CSW01_17765at 661.690 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.704 kb on + strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.712 kb on - strand, within CSW01_17765at 661.856 kb on - strand, within CSW01_17765at 661.900 kb on + strand, within CSW01_17765at 661.934 kb on + strand, within CSW01_17765at 662.029 kb on + strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.053 kb on - strand, within CSW01_17765at 662.063 kb on + strand, within CSW01_17765at 662.100 kb on + strand, within CSW01_17765at 662.184 kb on - strandat 662.189 kb on - strandat 662.217 kb on - strandat 662.234 kb on - strandat 662.240 kb on - strandat 662.393 kb on + strandat 662.399 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.428 kb on - strandat 662.483 kb on - strand, within CSW01_17770at 662.489 kb on - strand, within CSW01_17770at 662.497 kb on + strand, within CSW01_17770at 662.551 kb on + strand, within CSW01_17770at 662.596 kb on + strand, within CSW01_17770at 662.656 kb on - strand, within CSW01_17770at 662.682 kb on + strand, within CSW01_17770at 662.713 kb on + strand, within CSW01_17770at 662.783 kb on - strand, within CSW01_17770at 662.951 kb on - strand, within CSW01_17770at 662.960 kb on + strand, within CSW01_17770at 662.965 kb on - strand, within CSW01_17770at 662.968 kb on - strand, within CSW01_17770at 662.996 kb on + strand, within CSW01_17770at 663.004 kb on - strand, within CSW01_17770at 663.171 kb on + strand, within CSW01_17770at 663.173 kb on + strand, within CSW01_17770at 663.181 kb on + strand, within CSW01_17770at 663.217 kb on - strand, within CSW01_17770at 663.363 kb on + strandat 663.363 kb on - strandat 663.363 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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659,234 - CSW01_17760 0.63 -0.7
659,325 + CSW01_17760 0.67 +1.5
659,333 - CSW01_17760 0.68 +0.4
659,354 - CSW01_17760 0.69 +1.0
659,376 - CSW01_17760 0.70 +0.8
659,383 + CSW01_17760 0.70 -2.7
659,391 - CSW01_17760 0.70 -0.2
659,391 - CSW01_17760 0.70 +0.9
659,391 - CSW01_17760 0.70 -0.7
659,427 + CSW01_17760 0.72 -0.9
659,470 + CSW01_17760 0.74 -1.8
659,586 + CSW01_17760 0.80 -2.1
659,591 + CSW01_17760 0.80 -1.7
659,770 + CSW01_17760 0.89 -0.3
659,826 + +0.3
659,856 + -0.5
660,012 - +0.7
660,055 - +0.1
660,150 + +0.3
660,165 + +0.9
660,258 + -0.5
660,258 + -0.4
660,266 - -1.5
660,266 - +0.9
660,266 - +1.7
660,287 + +0.9
660,311 + +0.3
660,455 + CSW01_17765 0.12 -0.5
660,578 - CSW01_17765 0.18 -2.0
660,592 - CSW01_17765 0.19 +0.3
660,608 + CSW01_17765 0.19 +0.7
660,658 - CSW01_17765 0.22 -1.1
660,688 - CSW01_17765 0.23 +0.2
660,818 + CSW01_17765 0.29 +1.4
660,840 + CSW01_17765 0.30 +0.9
660,849 - CSW01_17765 0.30 +2.5
660,849 - CSW01_17765 0.30 -0.9
660,849 - CSW01_17765 0.30 +0.1
660,859 - CSW01_17765 0.31 -1.5
660,859 - CSW01_17765 0.31 +3.2
660,872 - CSW01_17765 0.31 -3.7
660,874 + CSW01_17765 0.31 -2.2
660,882 - CSW01_17765 0.32 -0.9
660,887 - CSW01_17765 0.32 -0.9
660,888 + CSW01_17765 0.32 +0.0
660,888 + CSW01_17765 0.32 -1.8
660,888 + CSW01_17765 0.32 -0.1
661,081 + CSW01_17765 0.41 -0.7
661,089 - CSW01_17765 0.41 +0.1
661,150 + CSW01_17765 0.44 +0.8
661,172 - CSW01_17765 0.45 -0.1
661,263 + CSW01_17765 0.49 +1.8
661,292 + CSW01_17765 0.51 -1.3
661,297 + CSW01_17765 0.51 -0.9
661,298 + CSW01_17765 0.51 +0.8
661,312 + CSW01_17765 0.52 +0.4
661,312 + CSW01_17765 0.52 -3.1
661,319 - CSW01_17765 0.52 +0.2
661,319 - CSW01_17765 0.52 -0.7
661,377 + CSW01_17765 0.55 -1.1
661,402 + CSW01_17765 0.56 -2.9
661,402 + CSW01_17765 0.56 +1.2
661,565 - CSW01_17765 0.63 +0.4
661,568 - CSW01_17765 0.63 +1.0
661,576 + CSW01_17765 0.64 -0.2
661,672 + CSW01_17765 0.68 -2.0
661,690 + CSW01_17765 0.69 +0.2
661,704 + CSW01_17765 0.70 -1.5
661,704 + CSW01_17765 0.70 +0.5
661,704 + CSW01_17765 0.70 -0.3
661,712 - CSW01_17765 0.70 +0.6
661,712 - CSW01_17765 0.70 -0.9
661,712 - CSW01_17765 0.70 -0.2
661,712 - CSW01_17765 0.70 -0.4
661,712 - CSW01_17765 0.70 +0.0
661,712 - CSW01_17765 0.70 -0.7
661,712 - CSW01_17765 0.70 +0.9
661,856 - CSW01_17765 0.77 -2.1
661,900 + CSW01_17765 0.79 -1.7
661,934 + CSW01_17765 0.80 -1.1
662,029 + CSW01_17765 0.84 -0.1
662,053 - CSW01_17765 0.86 -1.8
662,053 - CSW01_17765 0.86 -0.7
662,053 - CSW01_17765 0.86 +0.7
662,063 + CSW01_17765 0.86 -2.3
662,100 + CSW01_17765 0.88 +1.2
662,184 - -1.9
662,189 - +1.1
662,217 - +0.8
662,234 - +0.6
662,240 - -1.8
662,393 + -0.2
662,399 - -1.0
662,428 - -2.5
662,428 - +1.6
662,428 - +0.7
662,428 - -2.0
662,428 - +0.2
662,428 - -1.7
662,483 - CSW01_17770 0.11 +2.1
662,489 - CSW01_17770 0.12 +0.2
662,497 + CSW01_17770 0.13 -0.5
662,551 + CSW01_17770 0.18 -0.8
662,596 + CSW01_17770 0.23 -3.0
662,656 - CSW01_17770 0.30 -1.6
662,682 + CSW01_17770 0.32 +0.6
662,713 + CSW01_17770 0.36 -0.4
662,783 - CSW01_17770 0.43 -2.0
662,951 - CSW01_17770 0.61 +1.1
662,960 + CSW01_17770 0.62 -2.1
662,965 - CSW01_17770 0.62 -1.0
662,968 - CSW01_17770 0.62 -1.4
662,996 + CSW01_17770 0.65 +3.2
663,004 - CSW01_17770 0.66 +1.1
663,171 + CSW01_17770 0.84 -2.3
663,173 + CSW01_17770 0.84 -3.8
663,181 + CSW01_17770 0.85 -2.2
663,217 - CSW01_17770 0.89 -0.3
663,363 + +1.3
663,363 - -2.8
663,363 - +0.1

Or see this region's nucleotide sequence