Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17655

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17650 and CSW01_17655 are separated by 670 nucleotidesCSW01_17655 and CSW01_17660 are separated by 3 nucleotides CSW01_17650: CSW01_17650 - beta-ketoacyl-ACP reductase, at 627,503 to 628,243 _17650 CSW01_17655: CSW01_17655 - protein translocase subunit SecF, at 628,914 to 629,816 _17655 CSW01_17660: CSW01_17660 - protein translocase subunit SecD, at 629,820 to 631,658 _17660 Position (kb) 628 629 630Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 627.923 kb on - strand, within CSW01_17650at 628.066 kb on + strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.074 kb on - strand, within CSW01_17650at 628.122 kb on - strand, within CSW01_17650at 628.125 kb on + strand, within CSW01_17650at 628.178 kb on - strandat 628.198 kb on + strandat 628.249 kb on + strandat 628.250 kb on - strandat 628.282 kb on - strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.290 kb on + strandat 628.292 kb on + strandat 628.298 kb on - strandat 628.298 kb on - strandat 628.310 kb on - strandat 628.315 kb on - strandat 628.325 kb on + strandat 628.330 kb on - strandat 628.330 kb on - strandat 628.670 kb on + strandat 628.689 kb on + strandat 628.716 kb on + strandat 628.724 kb on - strandat 628.724 kb on - strandat 628.893 kb on + strandat 628.947 kb on - strandat 628.950 kb on - strandat 628.955 kb on - strandat 628.956 kb on + strandat 628.975 kb on + strandat 628.979 kb on + strandat 628.980 kb on + strandat 628.982 kb on - strandat 628.984 kb on + strandat 629.062 kb on - strand, within CSW01_17655at 629.122 kb on + strand, within CSW01_17655at 629.195 kb on - strand, within CSW01_17655at 629.419 kb on + strand, within CSW01_17655at 629.502 kb on + strand, within CSW01_17655at 629.520 kb on + strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.528 kb on - strand, within CSW01_17655at 629.551 kb on + strand, within CSW01_17655at 629.811 kb on + strandat 629.904 kb on + strandat 629.937 kb on + strandat 629.945 kb on - strandat 630.027 kb on + strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.035 kb on - strand, within CSW01_17660at 630.065 kb on - strand, within CSW01_17660at 630.097 kb on - strand, within CSW01_17660at 630.143 kb on - strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.159 kb on + strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.167 kb on - strand, within CSW01_17660at 630.172 kb on - strand, within CSW01_17660at 630.356 kb on + strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.502 kb on - strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.634 kb on + strand, within CSW01_17660at 630.648 kb on + strand, within CSW01_17660at 630.697 kb on - strand, within CSW01_17660

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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627,923 - CSW01_17650 0.57 +1.3
628,066 + CSW01_17650 0.76 +0.0
628,074 - CSW01_17650 0.77 -1.8
628,074 - CSW01_17650 0.77 -1.8
628,122 - CSW01_17650 0.84 +0.2
628,125 + CSW01_17650 0.84 -0.9
628,178 - -0.5
628,198 + +1.1
628,249 + +2.2
628,250 - -1.4
628,282 - -0.8
628,290 + +0.3
628,290 + -2.5
628,290 + +1.9
628,292 + -1.0
628,298 - -0.3
628,298 - -2.3
628,310 - -0.2
628,315 - -0.0
628,325 + +0.5
628,330 - +0.3
628,330 - +0.8
628,670 + +1.2
628,689 + -3.3
628,716 + -2.3
628,724 - +0.2
628,724 - -0.1
628,893 + +0.6
628,947 - -1.0
628,950 - -1.0
628,955 - -3.4
628,956 + +3.6
628,975 + +0.1
628,979 + -2.7
628,980 + +0.7
628,982 - -0.7
628,984 + -1.6
629,062 - CSW01_17655 0.16 -0.9
629,122 + CSW01_17655 0.23 +0.7
629,195 - CSW01_17655 0.31 +1.0
629,419 + CSW01_17655 0.56 +1.6
629,502 + CSW01_17655 0.65 +0.2
629,520 + CSW01_17655 0.67 -0.4
629,528 - CSW01_17655 0.68 -1.1
629,528 - CSW01_17655 0.68 +0.6
629,551 + CSW01_17655 0.71 -2.2
629,811 + +1.7
629,904 + +0.1
629,937 + +1.5
629,945 - -0.5
630,027 + CSW01_17660 0.11 -1.6
630,035 - CSW01_17660 0.12 +1.1
630,035 - CSW01_17660 0.12 +0.5
630,065 - CSW01_17660 0.13 +0.3
630,097 - CSW01_17660 0.15 +2.1
630,143 - CSW01_17660 0.18 -1.7
630,159 + CSW01_17660 0.18 -0.3
630,159 + CSW01_17660 0.18 -0.3
630,159 + CSW01_17660 0.18 +1.0
630,159 + CSW01_17660 0.18 -2.8
630,159 + CSW01_17660 0.18 -1.9
630,159 + CSW01_17660 0.18 +0.7
630,167 - CSW01_17660 0.19 +0.8
630,167 - CSW01_17660 0.19 -2.6
630,167 - CSW01_17660 0.19 +1.9
630,172 - CSW01_17660 0.19 -1.7
630,356 + CSW01_17660 0.29 +0.8
630,502 - CSW01_17660 0.37 +0.5
630,502 - CSW01_17660 0.37 +0.3
630,634 + CSW01_17660 0.44 +0.1
630,634 + CSW01_17660 0.44 +1.0
630,648 + CSW01_17660 0.45 +0.1
630,697 - CSW01_17660 0.48 +1.1

Or see this region's nucleotide sequence