Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17460 and CSW01_17465 overlap by 4 nucleotides CSW01_17465 and CSW01_17470 are separated by 271 nucleotides CSW01_17470 and CSW01_17475 are separated by 165 nucleotides
CSW01_17460: CSW01_17460 - D-alanine--D-alanine ligase, at 582,643 to 583,779
_17460
CSW01_17465: CSW01_17465 - DedA family protein, at 583,776 to 584,357
_17465
CSW01_17470: CSW01_17470 - DUF3069 domain-containing protein, at 584,629 to 585,066
_17470
CSW01_17475: CSW01_17475 - PTS maltose transporter subunit IIBC, at 585,232 to 586,671
_17475
Position (kb) 583
584
585 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 582.781 kb on - strand, within CSW01_17460 at 582.863 kb on - strand, within CSW01_17460 at 583.068 kb on - strand, within CSW01_17460 at 583.097 kb on + strand, within CSW01_17460 at 583.163 kb on - strand, within CSW01_17460 at 583.164 kb on + strand, within CSW01_17460 at 583.260 kb on - strand, within CSW01_17460 at 583.353 kb on + strand, within CSW01_17460 at 583.429 kb on - strand, within CSW01_17460 at 583.439 kb on + strand, within CSW01_17460 at 583.489 kb on - strand, within CSW01_17460 at 583.525 kb on + strand, within CSW01_17460 at 583.624 kb on - strand, within CSW01_17460 at 583.783 kb on - strand at 583.850 kb on + strand, within CSW01_17465 at 583.905 kb on - strand, within CSW01_17465 at 583.965 kb on - strand, within CSW01_17465 at 583.965 kb on - strand, within CSW01_17465 at 584.064 kb on - strand, within CSW01_17465 at 584.149 kb on + strand, within CSW01_17465 at 584.203 kb on + strand, within CSW01_17465 at 584.215 kb on + strand, within CSW01_17465 at 584.253 kb on - strand, within CSW01_17465 at 584.327 kb on - strand at 584.330 kb on - strand at 584.394 kb on - strand at 584.533 kb on + strand at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.681 kb on + strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.689 kb on - strand, within CSW01_17470 at 584.790 kb on - strand, within CSW01_17470 at 584.843 kb on - strand, within CSW01_17470 at 584.880 kb on - strand, within CSW01_17470 at 584.880 kb on - strand, within CSW01_17470 at 584.899 kb on + strand, within CSW01_17470 at 584.938 kb on + strand, within CSW01_17470 at 584.948 kb on - strand, within CSW01_17470 at 584.956 kb on - strand, within CSW01_17470 at 584.968 kb on + strand, within CSW01_17470 at 584.971 kb on + strand, within CSW01_17470 at 584.971 kb on + strand, within CSW01_17470 at 585.079 kb on - strand at 585.169 kb on + strand at 585.193 kb on + strand at 585.193 kb on + strand at 585.244 kb on - strand at 585.249 kb on - strand at 585.291 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 582,781 - CSW01_17460 0.12 +0.6 582,863 - CSW01_17460 0.19 +0.9 583,068 - CSW01_17460 0.37 -1.3 583,097 + CSW01_17460 0.40 -0.1 583,163 - CSW01_17460 0.46 -1.2 583,164 + CSW01_17460 0.46 +1.0 583,260 - CSW01_17460 0.54 +0.4 583,353 + CSW01_17460 0.62 +0.6 583,429 - CSW01_17460 0.69 -0.2 583,439 + CSW01_17460 0.70 +1.7 583,489 - CSW01_17460 0.74 +0.1 583,525 + CSW01_17460 0.78 -0.8 583,624 - CSW01_17460 0.86 -0.8 583,783 - +1.6 583,850 + CSW01_17465 0.13 -0.9 583,905 - CSW01_17465 0.22 -0.3 583,965 - CSW01_17465 0.32 -2.0 583,965 - CSW01_17465 0.32 -0.9 584,064 - CSW01_17465 0.49 -1.1 584,149 + CSW01_17465 0.64 +4.1 584,203 + CSW01_17465 0.73 +0.5 584,215 + CSW01_17465 0.75 +0.6 584,253 - CSW01_17465 0.82 -2.7 584,327 - +1.0 584,330 - +0.8 584,394 - +1.7 584,533 + +2.1 584,681 + CSW01_17470 0.12 -3.5 584,681 + CSW01_17470 0.12 +0.8 584,681 + CSW01_17470 0.12 +1.8 584,681 + CSW01_17470 0.12 +0.2 584,681 + CSW01_17470 0.12 -0.1 584,681 + CSW01_17470 0.12 +0.4 584,681 + CSW01_17470 0.12 +0.9 584,681 + CSW01_17470 0.12 +1.1 584,681 + CSW01_17470 0.12 +0.8 584,681 + CSW01_17470 0.12 +0.7 584,681 + CSW01_17470 0.12 +1.8 584,689 - CSW01_17470 0.14 +1.2 584,689 - CSW01_17470 0.14 -2.5 584,689 - CSW01_17470 0.14 +0.2 584,689 - CSW01_17470 0.14 -3.0 584,689 - CSW01_17470 0.14 -1.1 584,689 - CSW01_17470 0.14 -2.8 584,689 - CSW01_17470 0.14 +0.6 584,790 - CSW01_17470 0.37 +0.8 584,843 - CSW01_17470 0.49 +1.4 584,880 - CSW01_17470 0.57 +0.7 584,880 - CSW01_17470 0.57 -1.7 584,899 + CSW01_17470 0.62 +1.6 584,938 + CSW01_17470 0.71 -3.0 584,948 - CSW01_17470 0.73 +0.0 584,956 - CSW01_17470 0.75 +0.6 584,968 + CSW01_17470 0.77 +0.1 584,971 + CSW01_17470 0.78 -3.2 584,971 + CSW01_17470 0.78 -2.5 585,079 - +1.3 585,169 + -0.4 585,193 + +0.4 585,193 + -1.5 585,244 - +0.4 585,249 - -1.8 585,291 + +1.8
Or see this region's nucleotide sequence