Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17380 and CSW01_17385 overlap by 4 nucleotides CSW01_17385 and CSW01_17390 are separated by 3 nucleotides CSW01_17390 and CSW01_17395 are separated by 18 nucleotides CSW01_17395 and CSW01_17400 overlap by 4 nucleotides
CSW01_17380: CSW01_17380 - LysR family transcriptional regulator, at 568,772 to 569,713
_17380
CSW01_17385: CSW01_17385 - antibiotic biosynthesis monooxygenase, at 569,710 to 570,000
_17385
CSW01_17390: CSW01_17390 - oxygen-insensitive NAD(P)H-dependent nitroreductase NfsB, at 570,004 to 570,657
_17390
CSW01_17395: CSW01_17395 - hypothetical protein, at 570,676 to 570,876
_17395
CSW01_17400: CSW01_17400 - AcrB/AcrD/AcrF family protein, at 570,873 to 574,076
_17400
Position (kb) 570
571 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 569.015 kb on - strand, within CSW01_17380 at 569.051 kb on + strand, within CSW01_17380 at 569.150 kb on - strand, within CSW01_17380 at 569.258 kb on - strand, within CSW01_17380 at 569.284 kb on + strand, within CSW01_17380 at 569.299 kb on + strand, within CSW01_17380 at 569.332 kb on + strand, within CSW01_17380 at 569.346 kb on + strand, within CSW01_17380 at 569.346 kb on + strand, within CSW01_17380 at 569.346 kb on + strand, within CSW01_17380 at 569.409 kb on + strand, within CSW01_17380 at 569.417 kb on - strand, within CSW01_17380 at 569.422 kb on + strand, within CSW01_17380 at 569.426 kb on + strand, within CSW01_17380 at 569.458 kb on - strand, within CSW01_17380 at 569.515 kb on + strand, within CSW01_17380 at 569.526 kb on - strand, within CSW01_17380 at 569.667 kb on + strand at 569.918 kb on + strand, within CSW01_17385 at 569.938 kb on - strand, within CSW01_17385 at 569.972 kb on + strand at 570.091 kb on - strand, within CSW01_17390 at 570.104 kb on - strand, within CSW01_17390 at 570.106 kb on + strand, within CSW01_17390 at 570.106 kb on + strand, within CSW01_17390 at 570.106 kb on + strand, within CSW01_17390 at 570.252 kb on - strand, within CSW01_17390 at 570.378 kb on - strand, within CSW01_17390 at 570.418 kb on - strand, within CSW01_17390 at 570.465 kb on + strand, within CSW01_17390 at 570.532 kb on + strand, within CSW01_17390 at 570.556 kb on + strand, within CSW01_17390 at 570.700 kb on - strand, within CSW01_17395 at 570.821 kb on + strand, within CSW01_17395 at 570.821 kb on + strand, within CSW01_17395 at 570.878 kb on - strand at 570.907 kb on + strand at 570.912 kb on - strand at 570.912 kb on - strand at 570.933 kb on + strand at 570.933 kb on + strand at 570.938 kb on + strand at 570.938 kb on + strand at 570.941 kb on - strand at 571.005 kb on + strand at 571.005 kb on + strand at 571.056 kb on + strand at 571.096 kb on + strand at 571.096 kb on + strand at 571.096 kb on + strand at 571.096 kb on + strand at 571.096 kb on + strand at 571.104 kb on - strand at 571.104 kb on - strand at 571.104 kb on - strand at 571.104 kb on - strand at 571.212 kb on + strand, within CSW01_17400 at 571.288 kb on + strand, within CSW01_17400 at 571.288 kb on + strand, within CSW01_17400 at 571.296 kb on - strand, within CSW01_17400 at 571.296 kb on - strand, within CSW01_17400 at 571.296 kb on - strand, within CSW01_17400 at 571.408 kb on - strand, within CSW01_17400 at 571.410 kb on + strand, within CSW01_17400 at 571.432 kb on + strand, within CSW01_17400 at 571.432 kb on + strand, within CSW01_17400 at 571.432 kb on + strand, within CSW01_17400 at 571.432 kb on + strand, within CSW01_17400 at 571.432 kb on + strand, within CSW01_17400 at 571.440 kb on - strand, within CSW01_17400 at 571.440 kb on - strand, within CSW01_17400 at 571.440 kb on - strand, within CSW01_17400 at 571.540 kb on - strand, within CSW01_17400 at 571.581 kb on + strand, within CSW01_17400
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 569,015 - CSW01_17380 0.26 -1.4 569,051 + CSW01_17380 0.30 +1.9 569,150 - CSW01_17380 0.40 +0.5 569,258 - CSW01_17380 0.52 -0.0 569,284 + CSW01_17380 0.54 -0.5 569,299 + CSW01_17380 0.56 -2.1 569,332 + CSW01_17380 0.59 -0.7 569,346 + CSW01_17380 0.61 -2.6 569,346 + CSW01_17380 0.61 -2.8 569,346 + CSW01_17380 0.61 +1.6 569,409 + CSW01_17380 0.68 -1.4 569,417 - CSW01_17380 0.68 +0.2 569,422 + CSW01_17380 0.69 +0.1 569,426 + CSW01_17380 0.69 -1.6 569,458 - CSW01_17380 0.73 -0.1 569,515 + CSW01_17380 0.79 -2.7 569,526 - CSW01_17380 0.80 -0.7 569,667 + -3.5 569,918 + CSW01_17385 0.71 +0.7 569,938 - CSW01_17385 0.78 -1.7 569,972 + -1.3 570,091 - CSW01_17390 0.13 -1.0 570,104 - CSW01_17390 0.15 -0.7 570,106 + CSW01_17390 0.16 +1.4 570,106 + CSW01_17390 0.16 -1.4 570,106 + CSW01_17390 0.16 +0.4 570,252 - CSW01_17390 0.38 +0.6 570,378 - CSW01_17390 0.57 +0.7 570,418 - CSW01_17390 0.63 +0.4 570,465 + CSW01_17390 0.70 -3.1 570,532 + CSW01_17390 0.81 -1.5 570,556 + CSW01_17390 0.84 -3.6 570,700 - CSW01_17395 0.12 -0.2 570,821 + CSW01_17395 0.72 -0.1 570,821 + CSW01_17395 0.72 -3.3 570,878 - +0.3 570,907 + -1.8 570,912 - -0.2 570,912 - -1.4 570,933 + +2.2 570,933 + +1.1 570,938 + +1.1 570,938 + +0.2 570,941 - -2.2 571,005 + -0.5 571,005 + +0.7 571,056 + -2.1 571,096 + +1.6 571,096 + -0.7 571,096 + -1.6 571,096 + +2.0 571,096 + -1.7 571,104 - -1.3 571,104 - -1.3 571,104 - +0.0 571,104 - -0.3 571,212 + CSW01_17400 0.11 +0.2 571,288 + CSW01_17400 0.13 +1.0 571,288 + CSW01_17400 0.13 -3.1 571,296 - CSW01_17400 0.13 -0.8 571,296 - CSW01_17400 0.13 +1.7 571,296 - CSW01_17400 0.13 +0.9 571,408 - CSW01_17400 0.17 -0.3 571,410 + CSW01_17400 0.17 -2.9 571,432 + CSW01_17400 0.17 -1.1 571,432 + CSW01_17400 0.17 -0.9 571,432 + CSW01_17400 0.17 -0.5 571,432 + CSW01_17400 0.17 +0.2 571,432 + CSW01_17400 0.17 +0.5 571,440 - CSW01_17400 0.18 -0.2 571,440 - CSW01_17400 0.18 +1.2 571,440 - CSW01_17400 0.18 +0.6 571,540 - CSW01_17400 0.21 -1.3 571,581 + CSW01_17400 0.22 -2.4
Or see this region's nucleotide sequence