Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_17360

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_17350 and CSW01_17355 are separated by 12 nucleotidesCSW01_17355 and CSW01_17360 are separated by 15 nucleotidesCSW01_17360 and CSW01_17365 are separated by 32 nucleotidesCSW01_17365 and CSW01_17370 are separated by 39 nucleotides CSW01_17350: CSW01_17350 - AbrB family transcriptional regulator, at 564,418 to 565,458 _17350 CSW01_17355: CSW01_17355 - D-3-phosphoglycerate dehydrogenase, at 565,471 to 566,442 _17355 CSW01_17360: CSW01_17360 - GNAT family acetyltransferase, at 566,458 to 566,973 _17360 CSW01_17365: CSW01_17365 - DNA mismatch repair protein MutT, at 567,006 to 567,455 _17365 CSW01_17370: CSW01_17370 - hypothetical protein, at 567,495 to 567,845 _17370 Position (kb) 566 567Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 565.477 kb on - strandat 565.522 kb on - strandat 565.522 kb on - strandat 565.654 kb on + strand, within CSW01_17355at 565.656 kb on + strand, within CSW01_17355at 565.664 kb on - strand, within CSW01_17355at 565.668 kb on - strand, within CSW01_17355at 565.687 kb on - strand, within CSW01_17355at 565.692 kb on + strand, within CSW01_17355at 565.702 kb on - strand, within CSW01_17355at 566.017 kb on - strand, within CSW01_17355at 566.020 kb on + strand, within CSW01_17355at 566.028 kb on - strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.057 kb on + strand, within CSW01_17355at 566.065 kb on - strand, within CSW01_17355at 566.104 kb on + strand, within CSW01_17355at 566.111 kb on - strand, within CSW01_17355at 566.112 kb on - strand, within CSW01_17355at 566.174 kb on + strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.182 kb on - strand, within CSW01_17355at 566.184 kb on + strand, within CSW01_17355at 566.265 kb on + strand, within CSW01_17355at 566.284 kb on + strand, within CSW01_17355at 566.476 kb on - strandat 566.489 kb on - strandat 566.670 kb on + strand, within CSW01_17360at 566.726 kb on - strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.811 kb on + strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 566.819 kb on - strand, within CSW01_17360at 567.011 kb on + strandat 567.019 kb on - strandat 567.144 kb on - strand, within CSW01_17365at 567.155 kb on + strand, within CSW01_17365at 567.160 kb on - strand, within CSW01_17365at 567.162 kb on - strand, within CSW01_17365at 567.209 kb on + strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.217 kb on - strand, within CSW01_17365at 567.276 kb on + strand, within CSW01_17365at 567.378 kb on - strand, within CSW01_17365at 567.464 kb on + strandat 567.464 kb on + strandat 567.517 kb on - strandat 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.568 kb on + strand, within CSW01_17370at 567.646 kb on + strand, within CSW01_17370at 567.654 kb on - strand, within CSW01_17370at 567.673 kb on - strand, within CSW01_17370at 567.803 kb on - strand, within CSW01_17370at 567.876 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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565,477 - -0.4
565,522 - -2.6
565,522 - -2.2
565,654 + CSW01_17355 0.19 +1.3
565,656 + CSW01_17355 0.19 +1.7
565,664 - CSW01_17355 0.20 -0.3
565,668 - CSW01_17355 0.20 +1.0
565,687 - CSW01_17355 0.22 +0.0
565,692 + CSW01_17355 0.23 -0.6
565,702 - CSW01_17355 0.24 -1.6
566,017 - CSW01_17355 0.56 -0.2
566,020 + CSW01_17355 0.56 -1.7
566,028 - CSW01_17355 0.57 -1.7
566,057 + CSW01_17355 0.60 +0.4
566,057 + CSW01_17355 0.60 -0.1
566,065 - CSW01_17355 0.61 -2.2
566,104 + CSW01_17355 0.65 -1.7
566,111 - CSW01_17355 0.66 +0.7
566,112 - CSW01_17355 0.66 -2.7
566,174 + CSW01_17355 0.72 +2.1
566,182 - CSW01_17355 0.73 -2.0
566,182 - CSW01_17355 0.73 +0.1
566,184 + CSW01_17355 0.73 -2.2
566,265 + CSW01_17355 0.82 +1.9
566,284 + CSW01_17355 0.84 -0.5
566,476 - +1.2
566,489 - +2.6
566,670 + CSW01_17360 0.41 -3.2
566,726 - CSW01_17360 0.52 +0.5
566,811 + CSW01_17360 0.68 -1.9
566,811 + CSW01_17360 0.68 -3.2
566,819 - CSW01_17360 0.70 -1.2
566,819 - CSW01_17360 0.70 -2.5
567,011 + +0.7
567,019 - -1.1
567,144 - CSW01_17365 0.31 -0.8
567,155 + CSW01_17365 0.33 -1.0
567,160 - CSW01_17365 0.34 +0.9
567,162 - CSW01_17365 0.35 +0.9
567,209 + CSW01_17365 0.45 -1.8
567,217 - CSW01_17365 0.47 -0.2
567,217 - CSW01_17365 0.47 -0.5
567,276 + CSW01_17365 0.60 -1.4
567,378 - CSW01_17365 0.83 -2.4
567,464 + -0.1
567,464 + +0.9
567,517 - -0.3
567,568 + CSW01_17370 0.21 -2.2
567,568 + CSW01_17370 0.21 +0.7
567,568 + CSW01_17370 0.21 +0.8
567,646 + CSW01_17370 0.43 -2.9
567,654 - CSW01_17370 0.45 +0.5
567,673 - CSW01_17370 0.51 +2.0
567,803 - CSW01_17370 0.88 -1.8
567,876 - +1.5

Or see this region's nucleotide sequence