Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17325 and CSW01_17330 are separated by 48 nucleotides CSW01_17330 and CSW01_17335 are separated by 116 nucleotides
CSW01_17325: CSW01_17325 - transaldolase, at 555,297 to 556,247
_17325
CSW01_17330: CSW01_17330 - transketolase, at 556,296 to 558,338
_17330
CSW01_17335: CSW01_17335 - ligand-gated channel, at 558,455 to 560,809
_17335
Position (kb) 556
557
558
559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 555.395 kb on + strand, within CSW01_17325 at 555.395 kb on + strand, within CSW01_17325 at 555.413 kb on + strand, within CSW01_17325 at 555.440 kb on - strand, within CSW01_17325 at 555.444 kb on + strand, within CSW01_17325 at 555.459 kb on + strand, within CSW01_17325 at 555.504 kb on + strand, within CSW01_17325 at 555.512 kb on - strand, within CSW01_17325 at 555.514 kb on + strand, within CSW01_17325 at 555.751 kb on + strand, within CSW01_17325 at 555.765 kb on + strand, within CSW01_17325 at 555.767 kb on + strand, within CSW01_17325 at 555.840 kb on + strand, within CSW01_17325 at 555.866 kb on - strand, within CSW01_17325 at 555.891 kb on + strand, within CSW01_17325 at 555.928 kb on + strand, within CSW01_17325 at 555.936 kb on - strand, within CSW01_17325 at 555.954 kb on + strand, within CSW01_17325 at 556.021 kb on + strand, within CSW01_17325 at 556.054 kb on - strand, within CSW01_17325 at 556.064 kb on - strand, within CSW01_17325 at 556.113 kb on + strand, within CSW01_17325 at 556.178 kb on + strand at 556.186 kb on - strand at 556.298 kb on + strand at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.584 kb on - strand, within CSW01_17330 at 556.644 kb on + strand, within CSW01_17330 at 556.830 kb on + strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.863 kb on - strand, within CSW01_17330 at 556.942 kb on + strand, within CSW01_17330 at 557.130 kb on + strand, within CSW01_17330 at 557.130 kb on + strand, within CSW01_17330 at 557.138 kb on - strand, within CSW01_17330 at 557.147 kb on + strand, within CSW01_17330 at 557.155 kb on - strand, within CSW01_17330 at 557.296 kb on - strand, within CSW01_17330 at 557.739 kb on - strand, within CSW01_17330 at 558.007 kb on - strand, within CSW01_17330 at 558.526 kb on - strand at 558.681 kb on - strand at 558.819 kb on + strand, within CSW01_17335 at 558.827 kb on - strand, within CSW01_17335 at 558.933 kb on + strand, within CSW01_17335 at 559.033 kb on + strand, within CSW01_17335 at 559.162 kb on + strand, within CSW01_17335 at 559.263 kb on - strand, within CSW01_17335
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 555,395 + CSW01_17325 0.10 -0.4 555,395 + CSW01_17325 0.10 -0.1 555,413 + CSW01_17325 0.12 -0.1 555,440 - CSW01_17325 0.15 -2.6 555,444 + CSW01_17325 0.15 -1.4 555,459 + CSW01_17325 0.17 -2.7 555,504 + CSW01_17325 0.22 -4.4 555,512 - CSW01_17325 0.23 +0.7 555,514 + CSW01_17325 0.23 -2.8 555,751 + CSW01_17325 0.48 +0.8 555,765 + CSW01_17325 0.49 -1.6 555,767 + CSW01_17325 0.49 -0.3 555,840 + CSW01_17325 0.57 -1.1 555,866 - CSW01_17325 0.60 -1.7 555,891 + CSW01_17325 0.62 -2.0 555,928 + CSW01_17325 0.66 +3.7 555,936 - CSW01_17325 0.67 -3.6 555,954 + CSW01_17325 0.69 -2.6 556,021 + CSW01_17325 0.76 -1.6 556,054 - CSW01_17325 0.80 -1.0 556,064 - CSW01_17325 0.81 -4.0 556,113 + CSW01_17325 0.86 -1.1 556,178 + +0.2 556,186 - -1.2 556,298 + -1.0 556,584 - CSW01_17330 0.14 +0.3 556,584 - CSW01_17330 0.14 +2.9 556,584 - CSW01_17330 0.14 -1.0 556,584 - CSW01_17330 0.14 -0.6 556,644 + CSW01_17330 0.17 -1.8 556,830 + CSW01_17330 0.26 +0.8 556,863 - CSW01_17330 0.28 -1.1 556,863 - CSW01_17330 0.28 -2.2 556,863 - CSW01_17330 0.28 +0.6 556,942 + CSW01_17330 0.32 -1.4 557,130 + CSW01_17330 0.41 -1.2 557,130 + CSW01_17330 0.41 +1.0 557,138 - CSW01_17330 0.41 -2.6 557,147 + CSW01_17330 0.42 -0.5 557,155 - CSW01_17330 0.42 +0.1 557,296 - CSW01_17330 0.49 -0.2 557,739 - CSW01_17330 0.71 +0.9 558,007 - CSW01_17330 0.84 -0.6 558,526 - +2.3 558,681 - -1.6 558,819 + CSW01_17335 0.15 +0.7 558,827 - CSW01_17335 0.16 -1.0 558,933 + CSW01_17335 0.20 +1.9 559,033 + CSW01_17335 0.25 -1.5 559,162 + CSW01_17335 0.30 +0.8 559,263 - CSW01_17335 0.34 -3.0
Or see this region's nucleotide sequence