Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17280 and CSW01_17285 are separated by 127 nucleotides CSW01_17285 and CSW01_17290 are separated by 92 nucleotides CSW01_17290 and CSW01_17295 are separated by 151 nucleotides
CSW01_17280: CSW01_17280 - formate--tetrahydrofolate ligase, at 546,260 to 548,008
_17280
CSW01_17285: CSW01_17285 - peptide-methionine (R)-S-oxide reductase, at 548,136 to 549,320
_17285
CSW01_17290: CSW01_17290 - GTP cyclohydrolase I FolE, at 549,413 to 550,066
_17290
CSW01_17295: CSW01_17295 - molybdopterin molybdotransferase, at 550,218 to 551,453
_17295
Position (kb) 548
549
550 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 547.149 kb on - strand, within CSW01_17280 at 547.149 kb on - strand, within CSW01_17280 at 547.186 kb on + strand, within CSW01_17280 at 547.228 kb on - strand, within CSW01_17280 at 547.228 kb on - strand, within CSW01_17280 at 547.320 kb on + strand, within CSW01_17280 at 547.320 kb on + strand, within CSW01_17280 at 547.328 kb on - strand, within CSW01_17280 at 547.328 kb on - strand, within CSW01_17280 at 547.519 kb on + strand, within CSW01_17280 at 547.531 kb on + strand, within CSW01_17280 at 547.571 kb on - strand, within CSW01_17280 at 547.699 kb on + strand, within CSW01_17280 at 547.700 kb on + strand, within CSW01_17280 at 547.702 kb on - strand, within CSW01_17280 at 547.708 kb on - strand, within CSW01_17280 at 547.765 kb on - strand, within CSW01_17280 at 547.778 kb on - strand, within CSW01_17280 at 547.787 kb on - strand, within CSW01_17280 at 547.912 kb on + strand at 547.918 kb on - strand at 547.918 kb on - strand at 547.930 kb on - strand at 547.971 kb on + strand at 547.979 kb on - strand at 548.208 kb on + strand at 548.230 kb on + strand at 548.238 kb on - strand at 548.367 kb on + strand, within CSW01_17285 at 548.398 kb on - strand, within CSW01_17285 at 548.411 kb on + strand, within CSW01_17285 at 548.470 kb on + strand, within CSW01_17285 at 548.563 kb on + strand, within CSW01_17285 at 548.638 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.883 kb on + strand, within CSW01_17285 at 548.904 kb on + strand, within CSW01_17285 at 548.912 kb on - strand, within CSW01_17285 at 548.919 kb on + strand, within CSW01_17285 at 549.003 kb on - strand, within CSW01_17285 at 549.183 kb on + strand, within CSW01_17285 at 549.203 kb on - strand at 549.216 kb on - strand at 549.290 kb on - strand at 550.141 kb on - strand at 550.202 kb on + strand at 550.210 kb on - strand at 550.248 kb on - strand at 550.283 kb on + strand at 550.283 kb on + strand at 550.301 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 547,149 - CSW01_17280 0.51 -0.3 547,149 - CSW01_17280 0.51 -0.1 547,186 + CSW01_17280 0.53 -1.9 547,228 - CSW01_17280 0.55 +0.2 547,228 - CSW01_17280 0.55 +2.0 547,320 + CSW01_17280 0.61 +0.3 547,320 + CSW01_17280 0.61 -0.6 547,328 - CSW01_17280 0.61 +0.6 547,328 - CSW01_17280 0.61 -0.1 547,519 + CSW01_17280 0.72 +1.1 547,531 + CSW01_17280 0.73 +1.2 547,571 - CSW01_17280 0.75 +1.1 547,699 + CSW01_17280 0.82 +1.5 547,700 + CSW01_17280 0.82 -1.6 547,702 - CSW01_17280 0.82 -0.1 547,708 - CSW01_17280 0.83 -0.9 547,765 - CSW01_17280 0.86 +1.2 547,778 - CSW01_17280 0.87 +1.1 547,787 - CSW01_17280 0.87 -2.3 547,912 + -2.9 547,918 - +0.5 547,918 - +0.2 547,930 - -1.7 547,971 + -2.5 547,979 - +0.6 548,208 + -1.3 548,230 + +0.0 548,238 - +0.2 548,367 + CSW01_17285 0.19 +0.3 548,398 - CSW01_17285 0.22 -1.1 548,411 + CSW01_17285 0.23 -3.0 548,470 + CSW01_17285 0.28 +0.2 548,563 + CSW01_17285 0.36 +0.4 548,638 + CSW01_17285 0.42 -1.1 548,883 + CSW01_17285 0.63 +0.3 548,883 + CSW01_17285 0.63 -0.5 548,904 + CSW01_17285 0.65 -0.2 548,912 - CSW01_17285 0.65 -1.2 548,919 + CSW01_17285 0.66 +1.1 549,003 - CSW01_17285 0.73 -2.2 549,183 + CSW01_17285 0.88 +0.1 549,203 - -0.5 549,216 - -2.4 549,290 - +1.1 550,141 - -0.4 550,202 + +0.0 550,210 - -1.7 550,248 - +0.3 550,283 + -0.2 550,283 + -3.0 550,301 - +0.2
Or see this region's nucleotide sequence