Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_17000 and CSW01_17005 are separated by 269 nucleotides CSW01_17005 and CSW01_17010 are separated by 123 nucleotides CSW01_17010 and CSW01_17015 are separated by 96 nucleotides
CSW01_17000: CSW01_17000 - DUF3332 domain-containing protein, at 490,708 to 491,262
_17000
CSW01_17005: CSW01_17005 - sensor domain-containing diguanylate cyclase, at 491,532 to 492,941
_17005
CSW01_17010: CSW01_17010 - tRNA-Gly, at 493,065 to 493,139
_17010
CSW01_17015: CSW01_17015 - gamma-glutamyltransferase family protein, at 493,236 to 494,804
_17015
Position (kb) 491
492
493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 490.725 kb on + strand at 490.909 kb on - strand, within CSW01_17000 at 491.064 kb on - strand, within CSW01_17000 at 491.139 kb on - strand, within CSW01_17000 at 491.213 kb on - strand at 491.285 kb on + strand at 491.313 kb on - strand at 491.344 kb on + strand at 491.346 kb on + strand at 491.479 kb on - strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.544 kb on + strand at 491.632 kb on + strand at 491.640 kb on - strand at 491.657 kb on - strand at 491.657 kb on - strand at 491.841 kb on + strand, within CSW01_17005 at 491.846 kb on + strand, within CSW01_17005 at 491.864 kb on - strand, within CSW01_17005 at 491.905 kb on + strand, within CSW01_17005 at 491.912 kb on + strand, within CSW01_17005 at 491.983 kb on - strand, within CSW01_17005 at 492.012 kb on + strand, within CSW01_17005 at 492.026 kb on + strand, within CSW01_17005 at 492.066 kb on + strand, within CSW01_17005 at 492.128 kb on - strand, within CSW01_17005 at 492.174 kb on + strand, within CSW01_17005 at 492.257 kb on - strand, within CSW01_17005 at 492.334 kb on + strand, within CSW01_17005 at 492.403 kb on + strand, within CSW01_17005 at 492.549 kb on - strand, within CSW01_17005 at 492.688 kb on - strand, within CSW01_17005 at 492.792 kb on + strand, within CSW01_17005 at 492.819 kb on + strand at 492.819 kb on + strand at 492.827 kb on - strand at 492.862 kb on - strand at 492.880 kb on + strand at 492.887 kb on + strand at 492.911 kb on + strand at 492.911 kb on + strand at 492.942 kb on - strand at 492.942 kb on - strand at 493.341 kb on - strand at 493.361 kb on - strand at 493.383 kb on - strand at 493.457 kb on + strand, within CSW01_17015 at 493.457 kb on + strand, within CSW01_17015 at 493.465 kb on - strand, within CSW01_17015 at 493.473 kb on + strand, within CSW01_17015 at 493.481 kb on - strand, within CSW01_17015 at 493.485 kb on + strand, within CSW01_17015 at 493.493 kb on - strand, within CSW01_17015 at 493.526 kb on - strand, within CSW01_17015 at 493.598 kb on + strand, within CSW01_17015 at 493.601 kb on - strand, within CSW01_17015 at 493.684 kb on - strand, within CSW01_17015 at 493.691 kb on + strand, within CSW01_17015 at 493.699 kb on - strand, within CSW01_17015 at 493.778 kb on + strand, within CSW01_17015 at 493.786 kb on - strand, within CSW01_17015 at 493.789 kb on + strand, within CSW01_17015 at 493.807 kb on - strand, within CSW01_17015 at 493.935 kb on - strand, within CSW01_17015 at 493.940 kb on - strand, within CSW01_17015
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 490,725 + -1.3 490,909 - CSW01_17000 0.36 -1.8 491,064 - CSW01_17000 0.64 -2.0 491,139 - CSW01_17000 0.78 -3.3 491,213 - +1.2 491,285 + -0.8 491,313 - -2.9 491,344 + -3.5 491,346 + +0.5 491,479 - -0.7 491,544 + -1.1 491,544 + -0.3 491,544 + -0.6 491,544 + +0.8 491,632 + +0.6 491,640 - +1.7 491,657 - -3.1 491,657 - +1.2 491,841 + CSW01_17005 0.22 -0.2 491,846 + CSW01_17005 0.22 -2.3 491,864 - CSW01_17005 0.24 -0.3 491,905 + CSW01_17005 0.26 -2.7 491,912 + CSW01_17005 0.27 +0.1 491,983 - CSW01_17005 0.32 +0.3 492,012 + CSW01_17005 0.34 -0.8 492,026 + CSW01_17005 0.35 -2.5 492,066 + CSW01_17005 0.38 +1.2 492,128 - CSW01_17005 0.42 -1.9 492,174 + CSW01_17005 0.46 -1.3 492,257 - CSW01_17005 0.51 -0.4 492,334 + CSW01_17005 0.57 -1.8 492,403 + CSW01_17005 0.62 -0.2 492,549 - CSW01_17005 0.72 -0.9 492,688 - CSW01_17005 0.82 -2.3 492,792 + CSW01_17005 0.89 -2.9 492,819 + +0.8 492,819 + -1.4 492,827 - +1.2 492,862 - -2.5 492,880 + +0.7 492,887 + +0.4 492,911 + +0.7 492,911 + -0.1 492,942 - +0.3 492,942 - -0.2 493,341 - -1.1 493,361 - +0.6 493,383 - -1.2 493,457 + CSW01_17015 0.14 -0.3 493,457 + CSW01_17015 0.14 +0.1 493,465 - CSW01_17015 0.15 -2.0 493,473 + CSW01_17015 0.15 +0.9 493,481 - CSW01_17015 0.16 +0.6 493,485 + CSW01_17015 0.16 +0.7 493,493 - CSW01_17015 0.16 -2.5 493,526 - CSW01_17015 0.18 +1.7 493,598 + CSW01_17015 0.23 -0.7 493,601 - CSW01_17015 0.23 +3.3 493,684 - CSW01_17015 0.29 -3.4 493,691 + CSW01_17015 0.29 -1.0 493,699 - CSW01_17015 0.30 +1.5 493,778 + CSW01_17015 0.35 +0.2 493,786 - CSW01_17015 0.35 -3.3 493,789 + CSW01_17015 0.35 -2.1 493,807 - CSW01_17015 0.36 +3.1 493,935 - CSW01_17015 0.45 +0.7 493,940 - CSW01_17015 0.45 +0.2
Or see this region's nucleotide sequence