Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16905 and CSW01_16910 are separated by 162 nucleotides CSW01_16910 and CSW01_16915 are separated by 133 nucleotides
CSW01_16905: CSW01_16905 - DedA family protein, at 470,001 to 470,675
_16905
CSW01_16910: CSW01_16910 - hypothetical protein, at 470,838 to 471,218
_16910
CSW01_16915: CSW01_16915 - EAL domain-containing protein, at 471,352 to 472,218
_16915
Position (kb) 470
471
472 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 469.914 kb on + strand at 469.914 kb on + strand at 470.084 kb on + strand, within CSW01_16905 at 470.109 kb on - strand, within CSW01_16905 at 470.154 kb on + strand, within CSW01_16905 at 470.195 kb on - strand, within CSW01_16905 at 470.360 kb on + strand, within CSW01_16905 at 470.451 kb on + strand, within CSW01_16905 at 470.720 kb on - strand at 470.751 kb on + strand at 470.844 kb on - strand at 470.844 kb on - strand at 470.982 kb on + strand, within CSW01_16910 at 470.990 kb on - strand, within CSW01_16910 at 471.058 kb on + strand, within CSW01_16910 at 471.097 kb on + strand, within CSW01_16910 at 471.159 kb on + strand, within CSW01_16910 at 471.159 kb on + strand, within CSW01_16910 at 471.167 kb on + strand, within CSW01_16910 at 471.167 kb on + strand, within CSW01_16910 at 471.175 kb on - strand, within CSW01_16910 at 471.175 kb on - strand, within CSW01_16910 at 471.175 kb on - strand, within CSW01_16910 at 471.175 kb on - strand, within CSW01_16910 at 471.231 kb on - strand at 471.231 kb on - strand at 471.231 kb on - strand at 471.262 kb on - strand at 471.271 kb on + strand at 471.271 kb on + strand at 471.279 kb on - strand at 471.279 kb on - strand at 471.279 kb on - strand at 471.279 kb on - strand at 471.286 kb on - strand at 471.617 kb on - strand, within CSW01_16915 at 471.727 kb on + strand, within CSW01_16915 at 471.727 kb on + strand, within CSW01_16915 at 471.783 kb on + strand, within CSW01_16915 at 471.788 kb on + strand, within CSW01_16915 at 471.826 kb on + strand, within CSW01_16915 at 471.870 kb on + strand, within CSW01_16915 at 471.920 kb on - strand, within CSW01_16915 at 471.945 kb on - strand, within CSW01_16915 at 472.021 kb on - strand, within CSW01_16915 at 472.146 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 469,914 + -0.3 469,914 + -1.5 470,084 + CSW01_16905 0.12 +0.8 470,109 - CSW01_16905 0.16 -0.1 470,154 + CSW01_16905 0.23 -0.1 470,195 - CSW01_16905 0.29 +0.4 470,360 + CSW01_16905 0.53 -3.0 470,451 + CSW01_16905 0.67 +2.6 470,720 - -1.1 470,751 + +0.1 470,844 - -1.9 470,844 - +0.4 470,982 + CSW01_16910 0.38 -1.5 470,990 - CSW01_16910 0.40 -1.5 471,058 + CSW01_16910 0.58 +1.7 471,097 + CSW01_16910 0.68 +1.1 471,159 + CSW01_16910 0.84 +0.3 471,159 + CSW01_16910 0.84 -3.0 471,167 + CSW01_16910 0.86 -3.7 471,167 + CSW01_16910 0.86 -0.9 471,175 - CSW01_16910 0.88 -3.4 471,175 - CSW01_16910 0.88 -3.9 471,175 - CSW01_16910 0.88 -1.4 471,175 - CSW01_16910 0.88 -2.3 471,231 - -0.2 471,231 - -2.6 471,231 - +0.4 471,262 - -2.8 471,271 + -1.2 471,271 + +2.7 471,279 - +1.1 471,279 - +1.3 471,279 - -0.2 471,279 - -2.2 471,286 - -2.2 471,617 - CSW01_16915 0.31 -1.8 471,727 + CSW01_16915 0.43 -2.5 471,727 + CSW01_16915 0.43 +1.9 471,783 + CSW01_16915 0.50 +0.2 471,788 + CSW01_16915 0.50 -0.4 471,826 + CSW01_16915 0.55 -0.0 471,870 + CSW01_16915 0.60 +0.0 471,920 - CSW01_16915 0.66 -1.7 471,945 - CSW01_16915 0.68 -1.6 472,021 - CSW01_16915 0.77 +1.2 472,146 - -0.5
Or see this region's nucleotide sequence