Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16870 and CSW01_16875 are separated by 63 nucleotides CSW01_16875 and CSW01_16880 are separated by 322 nucleotides
CSW01_16870: CSW01_16870 - GTP-binding protein, at 459,552 to 460,541
_16870
CSW01_16875: CSW01_16875 - ribosome biogenesis GTPase YlqF, at 460,605 to 461,549
_16875
CSW01_16880: CSW01_16880 - potassium transporter Kup, at 461,872 to 463,734
_16880
Position (kb) 460
461
462 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 459.668 kb on - strand, within CSW01_16870 at 459.691 kb on - strand, within CSW01_16870 at 459.755 kb on - strand, within CSW01_16870 at 459.755 kb on - strand, within CSW01_16870 at 459.824 kb on - strand, within CSW01_16870 at 459.837 kb on + strand, within CSW01_16870 at 459.845 kb on - strand, within CSW01_16870 at 459.884 kb on + strand, within CSW01_16870 at 460.010 kb on - strand, within CSW01_16870 at 460.025 kb on + strand, within CSW01_16870 at 460.087 kb on + strand, within CSW01_16870 at 460.152 kb on + strand, within CSW01_16870 at 460.195 kb on + strand, within CSW01_16870 at 460.355 kb on + strand, within CSW01_16870 at 460.363 kb on - strand, within CSW01_16870 at 460.435 kb on + strand, within CSW01_16870 at 460.452 kb on - strand at 460.603 kb on + strand at 460.611 kb on - strand at 461.642 kb on - strand at 461.642 kb on - strand at 461.683 kb on - strand at 461.752 kb on - strand at 461.794 kb on + strand at 461.829 kb on + strand at 461.871 kb on + strand at 461.981 kb on + strand at 462.115 kb on + strand, within CSW01_16880 at 462.158 kb on - strand, within CSW01_16880 at 462.173 kb on - strand, within CSW01_16880 at 462.180 kb on + strand, within CSW01_16880 at 462.253 kb on + strand, within CSW01_16880 at 462.253 kb on + strand, within CSW01_16880 at 462.289 kb on + strand, within CSW01_16880 at 462.290 kb on + strand, within CSW01_16880 at 462.298 kb on - strand, within CSW01_16880 at 462.300 kb on + strand, within CSW01_16880 at 462.314 kb on + strand, within CSW01_16880 at 462.358 kb on - strand, within CSW01_16880 at 462.448 kb on + strand, within CSW01_16880 at 462.456 kb on - strand, within CSW01_16880 at 462.511 kb on - strand, within CSW01_16880
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 459,668 - CSW01_16870 0.12 +1.2 459,691 - CSW01_16870 0.14 +0.9 459,755 - CSW01_16870 0.21 -0.5 459,755 - CSW01_16870 0.21 -2.4 459,824 - CSW01_16870 0.27 +1.2 459,837 + CSW01_16870 0.29 -0.8 459,845 - CSW01_16870 0.30 -2.0 459,884 + CSW01_16870 0.34 -0.2 460,010 - CSW01_16870 0.46 -1.1 460,025 + CSW01_16870 0.48 -0.1 460,087 + CSW01_16870 0.54 -0.1 460,152 + CSW01_16870 0.61 -0.5 460,195 + CSW01_16870 0.65 +1.7 460,355 + CSW01_16870 0.81 -0.0 460,363 - CSW01_16870 0.82 -0.8 460,435 + CSW01_16870 0.89 +0.2 460,452 - -2.7 460,603 + -0.8 460,611 - -0.4 461,642 - -0.9 461,642 - +1.0 461,683 - -2.0 461,752 - -3.2 461,794 + -0.4 461,829 + -2.0 461,871 + +0.7 461,981 + +0.2 462,115 + CSW01_16880 0.13 +1.5 462,158 - CSW01_16880 0.15 -0.6 462,173 - CSW01_16880 0.16 +0.7 462,180 + CSW01_16880 0.17 -2.7 462,253 + CSW01_16880 0.20 +0.4 462,253 + CSW01_16880 0.20 -0.8 462,289 + CSW01_16880 0.22 +1.4 462,290 + CSW01_16880 0.22 -2.4 462,298 - CSW01_16880 0.23 -1.2 462,300 + CSW01_16880 0.23 +0.7 462,314 + CSW01_16880 0.24 -0.5 462,358 - CSW01_16880 0.26 -0.3 462,448 + CSW01_16880 0.31 -2.1 462,456 - CSW01_16880 0.31 -1.7 462,511 - CSW01_16880 0.34 -1.2
Or see this region's nucleotide sequence