Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16830 and CSW01_16835 are separated by 338 nucleotides CSW01_16835 and CSW01_16840 are separated by 53 nucleotides
CSW01_16830: CSW01_16830 - bifunctional PTS fructose transporter subunit IIA/HPr protein, at 446,061 to 447,263
_16830
CSW01_16835: CSW01_16835 - catabolite repressor/activator, at 447,602 to 448,582
_16835
CSW01_16840: CSW01_16840 - exonuclease sbcCD subunit D, at 448,636 to 449,775
_16840
Position (kb) 447
448
449 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 446.756 kb on + strand, within CSW01_16830 at 446.766 kb on + strand, within CSW01_16830 at 446.766 kb on + strand, within CSW01_16830 at 446.810 kb on - strand, within CSW01_16830 at 446.834 kb on + strand, within CSW01_16830 at 446.915 kb on + strand, within CSW01_16830 at 446.925 kb on - strand, within CSW01_16830 at 446.930 kb on + strand, within CSW01_16830 at 446.938 kb on - strand, within CSW01_16830 at 446.938 kb on - strand, within CSW01_16830 at 447.001 kb on + strand, within CSW01_16830 at 447.024 kb on + strand, within CSW01_16830 at 447.032 kb on - strand, within CSW01_16830 at 447.056 kb on + strand, within CSW01_16830 at 447.064 kb on - strand, within CSW01_16830 at 447.114 kb on + strand, within CSW01_16830 at 447.114 kb on + strand, within CSW01_16830 at 447.150 kb on + strand at 447.222 kb on + strand at 447.296 kb on - strand at 447.324 kb on + strand at 447.446 kb on + strand at 447.613 kb on - strand at 447.691 kb on - strand at 447.784 kb on - strand, within CSW01_16835 at 447.846 kb on + strand, within CSW01_16835 at 447.935 kb on + strand, within CSW01_16835 at 447.936 kb on - strand, within CSW01_16835 at 448.063 kb on + strand, within CSW01_16835 at 448.132 kb on + strand, within CSW01_16835 at 448.151 kb on - strand, within CSW01_16835 at 448.199 kb on + strand, within CSW01_16835 at 448.212 kb on + strand, within CSW01_16835 at 448.212 kb on + strand, within CSW01_16835 at 448.231 kb on + strand, within CSW01_16835 at 448.243 kb on + strand, within CSW01_16835 at 448.251 kb on - strand, within CSW01_16835 at 448.274 kb on - strand, within CSW01_16835 at 448.348 kb on + strand, within CSW01_16835 at 448.367 kb on - strand, within CSW01_16835 at 448.563 kb on + strand at 448.563 kb on + strand at 448.563 kb on + strand at 448.563 kb on + strand at 448.563 kb on + strand at 448.571 kb on - strand at 448.571 kb on - strand at 448.634 kb on - strand at 448.641 kb on - strand at 448.894 kb on + strand, within CSW01_16840 at 448.984 kb on + strand, within CSW01_16840 at 449.021 kb on + strand, within CSW01_16840 at 449.063 kb on + strand, within CSW01_16840 at 449.173 kb on - strand, within CSW01_16840 at 449.187 kb on + strand, within CSW01_16840 at 449.228 kb on + strand, within CSW01_16840 at 449.236 kb on - strand, within CSW01_16840 at 449.350 kb on - strand, within CSW01_16840 at 449.398 kb on + strand, within CSW01_16840 at 449.406 kb on - strand, within CSW01_16840 at 449.406 kb on - strand, within CSW01_16840 at 449.413 kb on + strand, within CSW01_16840 at 449.568 kb on + strand, within CSW01_16840
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 446,756 + CSW01_16830 0.58 -0.7 446,766 + CSW01_16830 0.59 -0.9 446,766 + CSW01_16830 0.59 -0.5 446,810 - CSW01_16830 0.62 +2.7 446,834 + CSW01_16830 0.64 -2.9 446,915 + CSW01_16830 0.71 -1.8 446,925 - CSW01_16830 0.72 +0.5 446,930 + CSW01_16830 0.72 -3.5 446,938 - CSW01_16830 0.73 -0.8 446,938 - CSW01_16830 0.73 -4.1 447,001 + CSW01_16830 0.78 -2.3 447,024 + CSW01_16830 0.80 +1.2 447,032 - CSW01_16830 0.81 -0.7 447,056 + CSW01_16830 0.83 +0.7 447,064 - CSW01_16830 0.83 +0.8 447,114 + CSW01_16830 0.88 -2.7 447,114 + CSW01_16830 0.88 -0.4 447,150 + +2.1 447,222 + -3.3 447,296 - +0.7 447,324 + +0.3 447,446 + -3.9 447,613 - -2.6 447,691 - -0.5 447,784 - CSW01_16835 0.19 -2.9 447,846 + CSW01_16835 0.25 -0.2 447,935 + CSW01_16835 0.34 +0.4 447,936 - CSW01_16835 0.34 -1.4 448,063 + CSW01_16835 0.47 -3.1 448,132 + CSW01_16835 0.54 -3.2 448,151 - CSW01_16835 0.56 -0.1 448,199 + CSW01_16835 0.61 -1.8 448,212 + CSW01_16835 0.62 -1.9 448,212 + CSW01_16835 0.62 -1.9 448,231 + CSW01_16835 0.64 -1.5 448,243 + CSW01_16835 0.65 -2.7 448,251 - CSW01_16835 0.66 -0.5 448,274 - CSW01_16835 0.69 +0.5 448,348 + CSW01_16835 0.76 +0.3 448,367 - CSW01_16835 0.78 -2.5 448,563 + -1.2 448,563 + +1.1 448,563 + -3.9 448,563 + -3.2 448,563 + +1.6 448,571 - -2.8 448,571 - -3.9 448,634 - -0.4 448,641 - -1.1 448,894 + CSW01_16840 0.23 -1.8 448,984 + CSW01_16840 0.31 +0.5 449,021 + CSW01_16840 0.34 -2.2 449,063 + CSW01_16840 0.37 -3.2 449,173 - CSW01_16840 0.47 -0.4 449,187 + CSW01_16840 0.48 +0.6 449,228 + CSW01_16840 0.52 -2.2 449,236 - CSW01_16840 0.53 -1.3 449,350 - CSW01_16840 0.63 -0.8 449,398 + CSW01_16840 0.67 -0.3 449,406 - CSW01_16840 0.68 -0.4 449,406 - CSW01_16840 0.68 -1.7 449,413 + CSW01_16840 0.68 +0.6 449,568 + CSW01_16840 0.82 +0.5
Or see this region's nucleotide sequence