Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16490 and CSW01_16495 are separated by 813 nucleotides CSW01_16495 and CSW01_16500 are separated by 222 nucleotides CSW01_16500 and CSW01_16505 overlap by 49 nucleotides CSW01_16505 and CSW01_16510 are separated by 196 nucleotides
CSW01_16490: CSW01_16490 - hypothetical protein, at 408,427 to 408,774
_16490
CSW01_16495: CSW01_16495 - hypothetical protein, at 409,588 to 409,857
_16495
CSW01_16500: CSW01_16500 - general secretion pathway protein GspH, at 410,080 to 410,223
_16500
CSW01_16505: CSW01_16505 - DUF645 domain-containing protein, at 410,175 to 410,346
_16505
CSW01_16510: CSW01_16510 - VOC family virulence protein, at 410,543 to 410,941
_16510
Position (kb) 409
410 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 409.083 kb on - strand at 409.103 kb on - strand at 409.103 kb on - strand at 409.133 kb on - strand at 409.217 kb on + strand at 409.262 kb on + strand at 409.316 kb on - strand at 409.552 kb on - strand at 409.668 kb on + strand, within CSW01_16495 at 409.668 kb on + strand, within CSW01_16495 at 409.668 kb on + strand, within CSW01_16495 at 409.676 kb on - strand, within CSW01_16495 at 409.703 kb on + strand, within CSW01_16495 at 409.703 kb on + strand, within CSW01_16495 at 409.711 kb on - strand, within CSW01_16495 at 409.721 kb on - strand, within CSW01_16495 at 409.796 kb on - strand, within CSW01_16495 at 410.255 kb on + strand, within CSW01_16505 at 410.275 kb on - strand, within CSW01_16505 at 410.275 kb on - strand, within CSW01_16505 at 410.305 kb on - strand, within CSW01_16505 at 410.421 kb on - strand at 410.421 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 409,083 - +0.5 409,103 - -0.9 409,103 - -3.1 409,133 - -0.1 409,217 + -2.7 409,262 + +1.0 409,316 - +1.3 409,552 - -0.2 409,668 + CSW01_16495 0.30 +0.1 409,668 + CSW01_16495 0.30 +0.1 409,668 + CSW01_16495 0.30 -2.0 409,676 - CSW01_16495 0.33 -0.3 409,703 + CSW01_16495 0.43 +0.1 409,703 + CSW01_16495 0.43 -1.1 409,711 - CSW01_16495 0.46 +0.1 409,721 - CSW01_16495 0.49 -0.8 409,796 - CSW01_16495 0.77 -3.1 410,255 + CSW01_16505 0.47 +0.4 410,275 - CSW01_16505 0.58 +1.0 410,275 - CSW01_16505 0.58 -0.3 410,305 - CSW01_16505 0.76 -0.3 410,421 - +0.2 410,421 - +0.8
Or see this region's nucleotide sequence