Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16375 and CSW01_16380 overlap by 4 nucleotides CSW01_16380 and CSW01_16385 are separated by 27 nucleotides CSW01_16385 and CSW01_16390 are separated by 136 nucleotides
CSW01_16375: CSW01_16375 - hypothetical protein, at 395,149 to 396,078
_16375
CSW01_16380: CSW01_16380 - DUF3265 domain-containing protein, at 396,075 to 396,185
_16380
CSW01_16385: CSW01_16385 - N-acetyltransferase, at 396,213 to 396,689
_16385
CSW01_16390: CSW01_16390 - lipocalin, at 396,826 to 397,341
_16390
Position (kb) 396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 395.086 kb on + strand at 395.088 kb on + strand at 395.088 kb on + strand at 395.125 kb on - strand at 395.142 kb on - strand at 395.143 kb on + strand at 395.143 kb on + strand at 395.158 kb on + strand at 395.170 kb on - strand at 395.222 kb on - strand at 395.235 kb on - strand at 395.240 kb on - strand at 395.315 kb on - strand, within CSW01_16375 at 395.315 kb on - strand, within CSW01_16375 at 395.325 kb on - strand, within CSW01_16375 at 395.346 kb on - strand, within CSW01_16375 at 395.347 kb on + strand, within CSW01_16375 at 395.501 kb on - strand, within CSW01_16375 at 395.501 kb on - strand, within CSW01_16375 at 395.501 kb on - strand, within CSW01_16375 at 395.519 kb on + strand, within CSW01_16375 at 395.527 kb on - strand, within CSW01_16375 at 395.527 kb on - strand, within CSW01_16375 at 395.529 kb on + strand, within CSW01_16375 at 395.529 kb on + strand, within CSW01_16375 at 395.534 kb on + strand, within CSW01_16375 at 395.534 kb on + strand, within CSW01_16375 at 395.534 kb on + strand, within CSW01_16375 at 395.537 kb on - strand, within CSW01_16375 at 395.539 kb on + strand, within CSW01_16375 at 395.539 kb on + strand, within CSW01_16375 at 395.539 kb on + strand, within CSW01_16375 at 395.539 kb on + strand, within CSW01_16375 at 395.604 kb on + strand, within CSW01_16375 at 395.637 kb on - strand, within CSW01_16375 at 395.652 kb on + strand, within CSW01_16375 at 395.652 kb on + strand, within CSW01_16375 at 395.654 kb on + strand, within CSW01_16375 at 395.685 kb on + strand, within CSW01_16375 at 395.758 kb on - strand, within CSW01_16375 at 395.760 kb on + strand, within CSW01_16375 at 395.760 kb on - strand, within CSW01_16375 at 395.897 kb on - strand, within CSW01_16375 at 395.922 kb on + strand, within CSW01_16375 at 395.930 kb on - strand, within CSW01_16375 at 395.930 kb on - strand, within CSW01_16375 at 396.037 kb on - strand at 396.604 kb on + strand, within CSW01_16385 at 396.661 kb on - strand at 396.704 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 395,086 + +0.5 395,088 + +0.3 395,088 + -0.2 395,125 - -0.0 395,142 - +2.6 395,143 + -0.0 395,143 + -0.5 395,158 + +1.3 395,170 - -2.6 395,222 - +0.5 395,235 - -3.1 395,240 - +1.2 395,315 - CSW01_16375 0.18 -3.0 395,315 - CSW01_16375 0.18 +0.6 395,325 - CSW01_16375 0.19 +0.2 395,346 - CSW01_16375 0.21 -3.5 395,347 + CSW01_16375 0.21 -0.5 395,501 - CSW01_16375 0.38 -3.0 395,501 - CSW01_16375 0.38 +1.6 395,501 - CSW01_16375 0.38 +0.2 395,519 + CSW01_16375 0.40 -0.5 395,527 - CSW01_16375 0.41 -3.8 395,527 - CSW01_16375 0.41 -0.3 395,529 + CSW01_16375 0.41 +0.8 395,529 + CSW01_16375 0.41 +0.4 395,534 + CSW01_16375 0.41 +1.0 395,534 + CSW01_16375 0.41 -0.0 395,534 + CSW01_16375 0.41 -0.6 395,537 - CSW01_16375 0.42 -1.5 395,539 + CSW01_16375 0.42 +0.6 395,539 + CSW01_16375 0.42 +0.3 395,539 + CSW01_16375 0.42 +0.9 395,539 + CSW01_16375 0.42 +1.5 395,604 + CSW01_16375 0.49 -1.0 395,637 - CSW01_16375 0.52 -1.5 395,652 + CSW01_16375 0.54 +0.7 395,652 + CSW01_16375 0.54 +1.5 395,654 + CSW01_16375 0.54 +0.3 395,685 + CSW01_16375 0.58 -3.3 395,758 - CSW01_16375 0.65 +0.3 395,760 + CSW01_16375 0.66 -0.5 395,760 - CSW01_16375 0.66 +0.6 395,897 - CSW01_16375 0.80 +1.2 395,922 + CSW01_16375 0.83 -3.7 395,930 - CSW01_16375 0.84 +0.4 395,930 - CSW01_16375 0.84 +1.8 396,037 - +0.6 396,604 + CSW01_16385 0.82 +0.2 396,661 - -2.0 396,704 - -3.2
Or see this region's nucleotide sequence