Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_16325

Experiment: ICP1_phage_0.23_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_16315 and CSW01_16320 are separated by 173 nucleotidesCSW01_16320 and CSW01_16325 overlap by 36 nucleotidesCSW01_16325 and CSW01_16330 overlap by 12 nucleotides CSW01_16315: CSW01_16315 - hypothetical protein, at 389,620 to 389,934 _16315 CSW01_16320: CSW01_16320 - VOC family protein, at 390,108 to 390,542 _16320 CSW01_16325: CSW01_16325 - hypothetical protein, at 390,507 to 390,707 _16325 CSW01_16330: CSW01_16330 - DUF2971 domain-containing protein, at 390,696 to 391,553 _16330 Position (kb) 390 391Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 390.175 kb on + strand, within CSW01_16320at 390.225 kb on + strand, within CSW01_16320at 390.225 kb on + strand, within CSW01_16320at 390.233 kb on - strand, within CSW01_16320at 390.277 kb on - strand, within CSW01_16320at 390.380 kb on + strand, within CSW01_16320at 390.398 kb on + strand, within CSW01_16320at 390.509 kb on + strandat 390.519 kb on + strandat 390.527 kb on - strandat 390.571 kb on - strand, within CSW01_16325at 390.751 kb on + strandat 390.752 kb on - strandat 390.759 kb on - strandat 390.760 kb on + strandat 390.760 kb on + strandat 390.760 kb on + strandat 390.760 kb on + strandat 390.761 kb on + strandat 390.761 kb on + strandat 390.765 kb on + strandat 390.768 kb on - strandat 390.768 kb on - strandat 390.769 kb on - strandat 390.770 kb on + strandat 390.770 kb on + strandat 390.778 kb on - strandat 390.778 kb on - strandat 390.789 kb on + strand, within CSW01_16330at 390.802 kb on + strand, within CSW01_16330at 390.939 kb on + strand, within CSW01_16330at 390.947 kb on - strand, within CSW01_16330at 390.953 kb on + strand, within CSW01_16330at 390.953 kb on + strand, within CSW01_16330at 390.953 kb on + strand, within CSW01_16330at 390.953 kb on + strand, within CSW01_16330at 390.953 kb on + strand, within CSW01_16330at 390.961 kb on - strand, within CSW01_16330at 390.961 kb on - strand, within CSW01_16330at 390.961 kb on - strand, within CSW01_16330at 390.970 kb on - strand, within CSW01_16330at 391.004 kb on - strand, within CSW01_16330at 391.004 kb on - strand, within CSW01_16330at 391.080 kb on + strand, within CSW01_16330at 391.080 kb on + strand, within CSW01_16330at 391.080 kb on + strand, within CSW01_16330at 391.088 kb on - strand, within CSW01_16330at 391.088 kb on - strand, within CSW01_16330at 391.088 kb on - strand, within CSW01_16330at 391.089 kb on + strand, within CSW01_16330at 391.090 kb on + strand, within CSW01_16330at 391.124 kb on - strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.188 kb on + strand, within CSW01_16330at 391.196 kb on - strand, within CSW01_16330at 391.196 kb on - strand, within CSW01_16330at 391.196 kb on - strand, within CSW01_16330at 391.196 kb on - strand, within CSW01_16330at 391.196 kb on - strand, within CSW01_16330at 391.276 kb on - strand, within CSW01_16330at 391.308 kb on + strand, within CSW01_16330at 391.308 kb on + strand, within CSW01_16330at 391.326 kb on + strand, within CSW01_16330at 391.334 kb on - strand, within CSW01_16330at 391.348 kb on - strand, within CSW01_16330at 391.367 kb on + strand, within CSW01_16330at 391.438 kb on - strand, within CSW01_16330at 391.568 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
remove
390,175 + CSW01_16320 0.15 +1.7
390,225 + CSW01_16320 0.27 +1.2
390,225 + CSW01_16320 0.27 -1.4
390,233 - CSW01_16320 0.29 +1.7
390,277 - CSW01_16320 0.39 +1.1
390,380 + CSW01_16320 0.63 -2.3
390,398 + CSW01_16320 0.67 -2.6
390,509 + -0.9
390,519 + -2.7
390,527 - +0.2
390,571 - CSW01_16325 0.32 -2.6
390,751 + -0.4
390,752 - +0.4
390,759 - -3.7
390,760 + +0.5
390,760 + -1.4
390,760 + +0.1
390,760 + -2.5
390,761 + +1.6
390,761 + +0.4
390,765 + +0.5
390,768 - +1.0
390,768 - -3.7
390,769 - +0.9
390,770 + -0.5
390,770 + -2.5
390,778 - -1.9
390,778 - -1.6
390,789 + CSW01_16330 0.11 -2.1
390,802 + CSW01_16330 0.12 +1.1
390,939 + CSW01_16330 0.28 +0.8
390,947 - CSW01_16330 0.29 -1.4
390,953 + CSW01_16330 0.30 +0.9
390,953 + CSW01_16330 0.30 +0.3
390,953 + CSW01_16330 0.30 -0.5
390,953 + CSW01_16330 0.30 +2.6
390,953 + CSW01_16330 0.30 -1.1
390,961 - CSW01_16330 0.31 +0.7
390,961 - CSW01_16330 0.31 +0.0
390,961 - CSW01_16330 0.31 +0.7
390,970 - CSW01_16330 0.32 -0.8
391,004 - CSW01_16330 0.36 +0.8
391,004 - CSW01_16330 0.36 -3.1
391,080 + CSW01_16330 0.45 +0.2
391,080 + CSW01_16330 0.45 +0.1
391,080 + CSW01_16330 0.45 -0.6
391,088 - CSW01_16330 0.46 +1.0
391,088 - CSW01_16330 0.46 -3.1
391,088 - CSW01_16330 0.46 +0.6
391,089 + CSW01_16330 0.46 -0.1
391,090 + CSW01_16330 0.46 +1.1
391,124 - CSW01_16330 0.50 +0.3
391,188 + CSW01_16330 0.57 +0.0
391,188 + CSW01_16330 0.57 +0.2
391,188 + CSW01_16330 0.57 +1.4
391,188 + CSW01_16330 0.57 -4.0
391,188 + CSW01_16330 0.57 +0.8
391,188 + CSW01_16330 0.57 -0.1
391,196 - CSW01_16330 0.58 +0.6
391,196 - CSW01_16330 0.58 +0.4
391,196 - CSW01_16330 0.58 -3.1
391,196 - CSW01_16330 0.58 +0.7
391,196 - CSW01_16330 0.58 -2.4
391,276 - CSW01_16330 0.68 -3.0
391,308 + CSW01_16330 0.71 -0.9
391,308 + CSW01_16330 0.71 +0.5
391,326 + CSW01_16330 0.73 -2.6
391,334 - CSW01_16330 0.74 +0.1
391,348 - CSW01_16330 0.76 +0.9
391,367 + CSW01_16330 0.78 +1.4
391,438 - CSW01_16330 0.86 +0.1
391,568 - -2.1

Or see this region's nucleotide sequence