Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15955 and CSW01_15960 are separated by 252 nucleotides CSW01_15960 and CSW01_15965 are separated by 302 nucleotides CSW01_15965 and CSW01_15970 are separated by 176 nucleotides CSW01_15970 and CSW01_15975 are separated by 143 nucleotides
CSW01_15955: CSW01_15955 - DUF3709 domain-containing protein, at 358,147 to 358,470
_15955
CSW01_15960: CSW01_15960 - hypothetical protein, at 358,723 to 359,118
_15960
CSW01_15965: CSW01_15965 - DUF645 domain-containing protein, at 359,421 to 359,602
_15965
CSW01_15970: CSW01_15970 - hypothetical protein, at 359,779 to 360,174
_15970
CSW01_15975: CSW01_15975 - nitrate reductase, at 360,318 to 360,854
_15975
Position (kb) 359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 358.496 kb on - strand at 359.502 kb on + strand, within CSW01_15965 at 359.502 kb on + strand, within CSW01_15965 at 359.502 kb on + strand, within CSW01_15965 at 359.510 kb on - strand, within CSW01_15965 at 359.578 kb on + strand, within CSW01_15965 at 359.667 kb on + strand at 359.712 kb on - strand at 360.367 kb on - strand at 360.376 kb on + strand, within CSW01_15975 at 360.384 kb on - strand, within CSW01_15975 at 360.401 kb on + strand, within CSW01_15975 at 360.443 kb on - strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.457 kb on + strand, within CSW01_15975 at 360.465 kb on - strand, within CSW01_15975 at 360.465 kb on - strand, within CSW01_15975
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 358,496 - -1.6 359,502 + CSW01_15965 0.45 -1.8 359,502 + CSW01_15965 0.45 +1.1 359,502 + CSW01_15965 0.45 -2.4 359,510 - CSW01_15965 0.49 -2.9 359,578 + CSW01_15965 0.86 -2.5 359,667 + +0.5 359,712 - +0.8 360,367 - -0.4 360,376 + CSW01_15975 0.11 -2.4 360,384 - CSW01_15975 0.12 -0.2 360,401 + CSW01_15975 0.15 -1.0 360,443 - CSW01_15975 0.23 +1.7 360,457 + CSW01_15975 0.26 -2.6 360,457 + CSW01_15975 0.26 +0.2 360,457 + CSW01_15975 0.26 -0.6 360,465 - CSW01_15975 0.27 -3.4 360,465 - CSW01_15975 0.27 -2.4
Or see this region's nucleotide sequence