Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15455 and CSW01_15460 are separated by 150 nucleotides CSW01_15460 and CSW01_15465 overlap by 44 nucleotides CSW01_15465 and CSW01_15470 are separated by 76 nucleotides CSW01_15470 and CSW01_15475 are separated by 97 nucleotides CSW01_15475 and CSW01_15480 are separated by 24 nucleotides CSW01_15480 and CSW01_15485 are separated by 41 nucleotides CSW01_15485 and CSW01_15490 are separated by 40 nucleotides
CSW01_15455: CSW01_15455 - hypothetical protein, at 312,897 to 313,340
_15455
CSW01_15460: CSW01_15460 - type B-5 chloramphenicol O-acetyltransferase CatB9, at 313,491 to 314,120
_15460
CSW01_15465: CSW01_15465 - hypothetical protein, at 314,077 to 314,199
_15465
CSW01_15470: CSW01_15470 - NAD(P)-dependent oxidoreductase, at 314,276 to 315,028
_15470
CSW01_15475: CSW01_15475 - hypothetical protein, at 315,126 to 315,305
_15475
CSW01_15480: CSW01_15480 - DUF645 domain-containing protein, at 315,330 to 315,512
_15480
CSW01_15485: CSW01_15485 - hypothetical protein, at 315,554 to 315,649
_15485
CSW01_15490: CSW01_15490 - hypothetical protein, at 315,690 to 316,094
_15490
Position (kb) 314
315
316 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 313.319 kb on - strand at 313.603 kb on + strand, within CSW01_15460 at 313.677 kb on - strand, within CSW01_15460 at 313.731 kb on + strand, within CSW01_15460 at 313.825 kb on + strand, within CSW01_15460 at 314.127 kb on - strand, within CSW01_15465 at 314.222 kb on + strand at 314.276 kb on - strand at 314.481 kb on + strand, within CSW01_15470 at 314.505 kb on + strand, within CSW01_15470 at 314.696 kb on - strand, within CSW01_15470 at 314.766 kb on - strand, within CSW01_15470 at 314.797 kb on - strand, within CSW01_15470 at 314.843 kb on + strand, within CSW01_15470 at 314.843 kb on + strand, within CSW01_15470 at 314.882 kb on - strand, within CSW01_15470 at 315.050 kb on - strand at 315.333 kb on - strand at 315.343 kb on - strand at 315.350 kb on - strand, within CSW01_15480 at 315.364 kb on - strand, within CSW01_15480 at 315.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 313,319 - +1.0 313,603 + CSW01_15460 0.18 -0.3 313,677 - CSW01_15460 0.30 +1.2 313,731 + CSW01_15460 0.38 +0.9 313,825 + CSW01_15460 0.53 +1.6 314,127 - CSW01_15465 0.41 -2.2 314,222 + -2.6 314,276 - +0.0 314,481 + CSW01_15470 0.27 -2.8 314,505 + CSW01_15470 0.30 -1.8 314,696 - CSW01_15470 0.56 +1.1 314,766 - CSW01_15470 0.65 +0.0 314,797 - CSW01_15470 0.69 +0.6 314,843 + CSW01_15470 0.75 -3.3 314,843 + CSW01_15470 0.75 -1.5 314,882 - CSW01_15470 0.80 -3.0 315,050 - +0.9 315,333 - +2.0 315,343 - +0.3 315,350 - CSW01_15480 0.11 -0.7 315,364 - CSW01_15480 0.19 +0.5 315,650 + +0.2
Or see this region's nucleotide sequence