Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15375 and CSW01_15380 are separated by 1 nucleotides CSW01_15380 and CSW01_15385 are separated by 268 nucleotides CSW01_15385 and CSW01_15390 are separated by 3 nucleotides CSW01_15390 and CSW01_15395 are separated by 103 nucleotides CSW01_15395 and CSW01_15400 are separated by 41 nucleotides
CSW01_15375: CSW01_15375 - hypothetical protein, at 304,756 to 305,427
_15375
CSW01_15380: CSW01_15380 - hypothetical protein, at 305,429 to 305,779
_15380
CSW01_15385: CSW01_15385 - threonine--tRNA ligase, at 306,048 to 307,976
_15385
CSW01_15390: CSW01_15390 - translation initiation factor IF-3, at 307,980 to 308,531
_15390
CSW01_15395: CSW01_15395 - 50S ribosomal protein L35, at 308,635 to 308,829
_15395
CSW01_15400: CSW01_15400 - 50S ribosomal protein L20, at 308,871 to 309,224
_15400
Position (kb) 306
307
308 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 305.194 kb on + strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.202 kb on - strand, within CSW01_15375 at 305.253 kb on - strand, within CSW01_15375 at 305.253 kb on - strand, within CSW01_15375 at 305.286 kb on + strand, within CSW01_15375 at 305.306 kb on + strand, within CSW01_15375 at 305.313 kb on - strand, within CSW01_15375 at 305.314 kb on - strand, within CSW01_15375 at 305.326 kb on + strand, within CSW01_15375 at 305.456 kb on + strand at 305.473 kb on - strand, within CSW01_15380 at 305.473 kb on - strand, within CSW01_15380 at 305.496 kb on - strand, within CSW01_15380 at 305.569 kb on + strand, within CSW01_15380 at 305.574 kb on + strand, within CSW01_15380 at 305.577 kb on - strand, within CSW01_15380 at 305.582 kb on + strand, within CSW01_15380 at 305.590 kb on - strand, within CSW01_15380 at 305.612 kb on + strand, within CSW01_15380 at 305.640 kb on - strand, within CSW01_15380 at 305.671 kb on - strand, within CSW01_15380 at 305.768 kb on - strand at 305.776 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 305,194 + CSW01_15375 0.65 +0.4 305,202 - CSW01_15375 0.66 +0.0 305,202 - CSW01_15375 0.66 +0.9 305,202 - CSW01_15375 0.66 +0.8 305,253 - CSW01_15375 0.74 +0.9 305,253 - CSW01_15375 0.74 +0.3 305,286 + CSW01_15375 0.79 -0.8 305,306 + CSW01_15375 0.82 +0.1 305,313 - CSW01_15375 0.83 -3.5 305,314 - CSW01_15375 0.83 +1.3 305,326 + CSW01_15375 0.85 -0.5 305,456 + +1.1 305,473 - CSW01_15380 0.13 -0.0 305,473 - CSW01_15380 0.13 -1.1 305,496 - CSW01_15380 0.19 +1.2 305,569 + CSW01_15380 0.40 -2.6 305,574 + CSW01_15380 0.41 +0.7 305,577 - CSW01_15380 0.42 -2.8 305,582 + CSW01_15380 0.44 -3.3 305,590 - CSW01_15380 0.46 -3.3 305,612 + CSW01_15380 0.52 +0.2 305,640 - CSW01_15380 0.60 -0.4 305,671 - CSW01_15380 0.69 -2.5 305,768 - -1.1 305,776 - -0.3
Or see this region's nucleotide sequence