Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15245 and CSW01_15250 are separated by 102 nucleotides CSW01_15250 and CSW01_15255 are separated by 194 nucleotides CSW01_15255 and CSW01_15260 are separated by 109 nucleotides CSW01_15260 and CSW01_15265 are separated by 105 nucleotides
CSW01_15245: CSW01_15245 - histidine kinase, at 276,540 to 277,994
_15245
CSW01_15250: CSW01_15250 - cupin domain-containing protein, at 278,097 to 278,609
_15250
CSW01_15255: CSW01_15255 - copper-binding protein, at 278,804 to 279,313
_15255
CSW01_15260: CSW01_15260 - hypothetical protein, at 279,423 to 279,833
_15260
CSW01_15265: CSW01_15265 - N-acetyltransferase, at 279,939 to 280,481
_15265
Position (kb) 278
279
280 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 277.809 kb on - strand, within CSW01_15245 at 277.809 kb on - strand, within CSW01_15245 at 277.903 kb on + strand at 277.913 kb on + strand at 277.913 kb on + strand at 277.913 kb on + strand at 277.913 kb on + strand at 277.913 kb on + strand at 277.913 kb on + strand at 277.918 kb on + strand at 277.918 kb on + strand at 277.918 kb on + strand at 277.921 kb on - strand at 277.921 kb on - strand at 277.928 kb on + strand at 277.937 kb on - strand at 277.947 kb on - strand at 277.961 kb on + strand at 277.969 kb on - strand at 277.969 kb on - strand at 278.125 kb on - strand at 278.125 kb on - strand at 278.143 kb on + strand at 278.168 kb on + strand, within CSW01_15250 at 278.178 kb on + strand, within CSW01_15250 at 278.242 kb on + strand, within CSW01_15250 at 278.243 kb on - strand, within CSW01_15250 at 278.298 kb on + strand, within CSW01_15250 at 278.311 kb on - strand, within CSW01_15250 at 278.348 kb on + strand, within CSW01_15250 at 278.353 kb on - strand, within CSW01_15250 at 278.353 kb on - strand, within CSW01_15250 at 278.384 kb on - strand, within CSW01_15250 at 278.894 kb on + strand, within CSW01_15255 at 278.925 kb on - strand, within CSW01_15255 at 278.925 kb on - strand, within CSW01_15255 at 278.925 kb on - strand, within CSW01_15255 at 278.942 kb on + strand, within CSW01_15255 at 279.078 kb on - strand, within CSW01_15255 at 279.269 kb on - strand at 279.296 kb on - strand at 279.346 kb on - strand at 279.463 kb on - strand at 279.514 kb on - strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.608 kb on + strand, within CSW01_15260 at 279.609 kb on - strand, within CSW01_15260 at 279.623 kb on + strand, within CSW01_15260 at 279.630 kb on + strand, within CSW01_15260 at 279.749 kb on - strand, within CSW01_15260 at 279.749 kb on - strand, within CSW01_15260 at 279.790 kb on - strand, within CSW01_15260 at 279.792 kb on + strand, within CSW01_15260 at 279.805 kb on - strand at 279.919 kb on - strand at 279.966 kb on - strand at 280.050 kb on + strand, within CSW01_15265 at 280.050 kb on + strand, within CSW01_15265 at 280.133 kb on - strand, within CSW01_15265 at 280.138 kb on - strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.176 kb on + strand, within CSW01_15265 at 280.184 kb on - strand, within CSW01_15265 at 280.194 kb on + strand, within CSW01_15265 at 280.216 kb on + strand, within CSW01_15265
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 277,809 - CSW01_15245 0.87 +0.6 277,809 - CSW01_15245 0.87 -0.3 277,903 + -0.2 277,913 + -0.8 277,913 + +0.7 277,913 + -0.8 277,913 + -2.8 277,913 + -0.1 277,913 + +2.3 277,918 + +0.3 277,918 + -2.8 277,918 + +1.0 277,921 - -0.2 277,921 - -1.5 277,928 + -0.5 277,937 - +2.3 277,947 - +0.1 277,961 + -3.4 277,969 - +1.0 277,969 - +1.3 278,125 - -2.1 278,125 - -2.0 278,143 + -0.6 278,168 + CSW01_15250 0.14 -1.5 278,178 + CSW01_15250 0.16 -0.3 278,242 + CSW01_15250 0.28 -0.2 278,243 - CSW01_15250 0.28 -0.1 278,298 + CSW01_15250 0.39 +0.1 278,311 - CSW01_15250 0.42 -2.6 278,348 + CSW01_15250 0.49 +0.2 278,353 - CSW01_15250 0.50 -2.3 278,353 - CSW01_15250 0.50 +0.4 278,384 - CSW01_15250 0.56 -1.1 278,894 + CSW01_15255 0.18 -0.8 278,925 - CSW01_15255 0.24 -1.1 278,925 - CSW01_15255 0.24 -3.6 278,925 - CSW01_15255 0.24 -2.9 278,942 + CSW01_15255 0.27 +2.5 279,078 - CSW01_15255 0.54 -2.7 279,269 - -2.1 279,296 - -2.2 279,346 - -0.8 279,463 - -0.3 279,514 - CSW01_15260 0.22 -1.5 279,608 + CSW01_15260 0.45 -0.0 279,608 + CSW01_15260 0.45 -1.9 279,608 + CSW01_15260 0.45 -0.2 279,609 - CSW01_15260 0.45 +1.6 279,623 + CSW01_15260 0.49 -2.6 279,630 + CSW01_15260 0.50 +0.3 279,749 - CSW01_15260 0.79 -2.2 279,749 - CSW01_15260 0.79 +0.9 279,790 - CSW01_15260 0.89 +0.4 279,792 + CSW01_15260 0.90 +0.4 279,805 - -0.1 279,919 - +0.8 279,966 - +0.6 280,050 + CSW01_15265 0.20 +0.6 280,050 + CSW01_15265 0.20 -1.8 280,133 - CSW01_15265 0.36 -2.3 280,138 - CSW01_15265 0.37 +1.4 280,176 + CSW01_15265 0.44 -2.9 280,176 + CSW01_15265 0.44 +0.5 280,176 + CSW01_15265 0.44 -3.4 280,184 - CSW01_15265 0.45 -0.3 280,194 + CSW01_15265 0.47 +2.2 280,216 + CSW01_15265 0.51 -0.5
Or see this region's nucleotide sequence