Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15175

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15165 and CSW01_15170 are separated by 2 nucleotidesCSW01_15170 and CSW01_15175 overlap by 41 nucleotidesCSW01_15175 and CSW01_15180 are separated by 11 nucleotidesCSW01_15180 and CSW01_15185 are separated by 5 nucleotides CSW01_15165: CSW01_15165 - DNA-binding response regulator, at 260,368 to 261,042 _15165 CSW01_15170: CSW01_15170 - hypothetical protein, at 261,045 to 261,674 _15170 CSW01_15175: CSW01_15175 - xylulose 5-phosphate 3-epimerase, at 261,634 to 262,518 _15175 CSW01_15180: CSW01_15180 - 3-keto-L-gulonate-6-phosphate decarboxylase, at 262,530 to 263,177 _15180 CSW01_15185: CSW01_15185 - Cof-type HAD-IIB family hydrolase, at 263,183 to 264,004 _15185 Position (kb) 261 262 263Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 260.672 kb on - strand, within CSW01_15165at 260.672 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.708 kb on - strand, within CSW01_15165at 260.733 kb on - strand, within CSW01_15165at 260.923 kb on + strand, within CSW01_15165at 261.005 kb on - strandat 261.020 kb on - strandat 261.029 kb on - strandat 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.124 kb on + strand, within CSW01_15170at 261.132 kb on - strand, within CSW01_15170at 261.269 kb on + strand, within CSW01_15170at 261.276 kb on + strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.277 kb on - strand, within CSW01_15170at 261.284 kb on - strand, within CSW01_15170at 261.309 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.366 kb on - strand, within CSW01_15170at 261.379 kb on - strand, within CSW01_15170at 261.426 kb on - strand, within CSW01_15170at 261.430 kb on + strand, within CSW01_15170at 261.438 kb on - strand, within CSW01_15170at 261.445 kb on + strand, within CSW01_15170at 261.455 kb on + strand, within CSW01_15170at 261.624 kb on + strandat 261.624 kb on + strandat 261.624 kb on + strandat 261.632 kb on - strandat 261.632 kb on - strandat 261.632 kb on - strandat 261.703 kb on + strandat 261.709 kb on - strandat 261.709 kb on - strandat 261.747 kb on - strand, within CSW01_15175at 261.761 kb on + strand, within CSW01_15175at 261.764 kb on - strand, within CSW01_15175at 261.769 kb on - strand, within CSW01_15175at 261.784 kb on + strand, within CSW01_15175at 261.861 kb on + strand, within CSW01_15175at 261.869 kb on - strand, within CSW01_15175at 261.869 kb on - strand, within CSW01_15175at 261.891 kb on - strand, within CSW01_15175at 261.965 kb on - strand, within CSW01_15175at 262.013 kb on - strand, within CSW01_15175at 262.013 kb on - strand, within CSW01_15175at 262.029 kb on + strand, within CSW01_15175at 262.037 kb on - strand, within CSW01_15175at 262.060 kb on + strand, within CSW01_15175at 262.093 kb on + strand, within CSW01_15175at 262.210 kb on - strand, within CSW01_15175at 262.280 kb on + strand, within CSW01_15175at 262.310 kb on + strand, within CSW01_15175at 262.337 kb on + strand, within CSW01_15175at 262.425 kb on + strand, within CSW01_15175at 262.433 kb on - strandat 262.566 kb on - strandat 262.641 kb on - strand, within CSW01_15180at 262.682 kb on + strand, within CSW01_15180at 262.682 kb on + strand, within CSW01_15180at 262.690 kb on - strand, within CSW01_15180at 263.213 kb on + strandat 263.226 kb on - strandat 263.242 kb on + strandat 263.250 kb on - strandat 263.280 kb on + strand, within CSW01_15185at 263.288 kb on - strand, within CSW01_15185at 263.307 kb on + strand, within CSW01_15185at 263.317 kb on + strand, within CSW01_15185at 263.319 kb on + strand, within CSW01_15185at 263.387 kb on + strand, within CSW01_15185at 263.404 kb on + strand, within CSW01_15185at 263.406 kb on + strand, within CSW01_15185at 263.407 kb on - strand, within CSW01_15185at 263.412 kb on - strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.460 kb on + strand, within CSW01_15185at 263.503 kb on + strand, within CSW01_15185at 263.508 kb on - strand, within CSW01_15185

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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260,672 - CSW01_15165 0.45 -1.9
260,672 - CSW01_15165 0.45 -0.1
260,708 - CSW01_15165 0.50 -1.6
260,708 - CSW01_15165 0.50 -0.8
260,733 - CSW01_15165 0.54 -0.4
260,923 + CSW01_15165 0.82 -3.9
261,005 - +1.5
261,020 - -1.6
261,029 - -1.9
261,124 + CSW01_15170 0.13 +0.4
261,124 + CSW01_15170 0.13 -0.2
261,124 + CSW01_15170 0.13 -1.1
261,132 - CSW01_15170 0.14 +2.6
261,269 + CSW01_15170 0.36 +0.7
261,276 + CSW01_15170 0.37 -0.1
261,277 - CSW01_15170 0.37 -2.8
261,277 - CSW01_15170 0.37 -3.1
261,284 - CSW01_15170 0.38 -1.1
261,309 - CSW01_15170 0.42 -0.7
261,366 - CSW01_15170 0.51 +0.3
261,366 - CSW01_15170 0.51 -2.0
261,379 - CSW01_15170 0.53 -1.5
261,426 - CSW01_15170 0.60 -1.0
261,430 + CSW01_15170 0.61 +1.4
261,438 - CSW01_15170 0.62 -2.8
261,445 + CSW01_15170 0.63 -1.8
261,455 + CSW01_15170 0.65 +0.3
261,624 + +0.5
261,624 + -0.2
261,624 + -0.6
261,632 - -0.4
261,632 - -0.1
261,632 - +1.8
261,703 + +1.1
261,709 - -2.3
261,709 - +0.7
261,747 - CSW01_15175 0.13 -0.8
261,761 + CSW01_15175 0.14 +0.2
261,764 - CSW01_15175 0.15 -1.6
261,769 - CSW01_15175 0.15 -3.0
261,784 + CSW01_15175 0.17 -2.1
261,861 + CSW01_15175 0.26 -1.6
261,869 - CSW01_15175 0.27 -2.1
261,869 - CSW01_15175 0.27 -3.1
261,891 - CSW01_15175 0.29 -0.9
261,965 - CSW01_15175 0.37 -0.5
262,013 - CSW01_15175 0.43 -1.0
262,013 - CSW01_15175 0.43 -1.2
262,029 + CSW01_15175 0.45 -0.8
262,037 - CSW01_15175 0.46 -2.5
262,060 + CSW01_15175 0.48 -0.2
262,093 + CSW01_15175 0.52 -2.8
262,210 - CSW01_15175 0.65 +0.5
262,280 + CSW01_15175 0.73 -3.3
262,310 + CSW01_15175 0.76 +1.4
262,337 + CSW01_15175 0.79 +0.8
262,425 + CSW01_15175 0.89 -4.0
262,433 - -2.6
262,566 - -0.2
262,641 - CSW01_15180 0.17 +0.3
262,682 + CSW01_15180 0.23 -0.8
262,682 + CSW01_15180 0.23 -2.5
262,690 - CSW01_15180 0.25 +1.2
263,213 + +0.1
263,226 - +2.2
263,242 + -3.1
263,250 - +0.4
263,280 + CSW01_15185 0.12 -2.4
263,288 - CSW01_15185 0.13 -0.5
263,307 + CSW01_15185 0.15 +1.7
263,317 + CSW01_15185 0.16 -0.6
263,319 + CSW01_15185 0.17 -0.2
263,387 + CSW01_15185 0.25 -1.4
263,404 + CSW01_15185 0.27 -1.4
263,406 + CSW01_15185 0.27 -1.1
263,407 - CSW01_15185 0.27 -0.6
263,412 - CSW01_15185 0.28 -2.1
263,460 + CSW01_15185 0.34 +0.6
263,460 + CSW01_15185 0.34 +0.3
263,503 + CSW01_15185 0.39 +0.4
263,508 - CSW01_15185 0.40 -0.4

Or see this region's nucleotide sequence