Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14490 and CSW01_14495 are separated by 12 nucleotides CSW01_14495 and CSW01_14500 are separated by 117 nucleotides CSW01_14500 and CSW01_14505 are separated by 86 nucleotides
CSW01_14490: CSW01_14490 - endo-1,4-beta-xylanase, at 103,160 to 104,383
_14490
CSW01_14495: CSW01_14495 - NUDIX hydrolase, at 104,396 to 105,112
_14495
CSW01_14500: CSW01_14500 - hypothetical protein, at 105,230 to 105,424
_14500
CSW01_14505: CSW01_14505 - nicotinate phosphoribosyltransferase, at 105,511 to 106,818
_14505
Position (kb) 105
106 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 104.350 kb on - strand at 104.360 kb on - strand at 104.360 kb on - strand at 104.360 kb on - strand at 104.378 kb on + strand at 104.476 kb on - strand, within CSW01_14495 at 104.476 kb on - strand, within CSW01_14495 at 104.616 kb on + strand, within CSW01_14495 at 104.616 kb on + strand, within CSW01_14495 at 104.616 kb on + strand, within CSW01_14495 at 104.624 kb on - strand, within CSW01_14495 at 104.624 kb on - strand, within CSW01_14495 at 104.639 kb on + strand, within CSW01_14495 at 104.853 kb on + strand, within CSW01_14495 at 104.861 kb on - strand, within CSW01_14495 at 105.079 kb on + strand at 105.089 kb on + strand at 105.124 kb on + strand at 105.132 kb on - strand at 105.132 kb on - strand at 105.192 kb on + strand at 105.207 kb on + strand at 105.207 kb on + strand at 105.207 kb on + strand at 105.207 kb on + strand at 105.207 kb on + strand at 105.207 kb on + strand at 105.215 kb on - strand at 105.215 kb on - strand at 105.215 kb on - strand at 105.215 kb on - strand at 105.226 kb on + strand at 105.266 kb on + strand, within CSW01_14500 at 105.267 kb on + strand, within CSW01_14500 at 105.336 kb on + strand, within CSW01_14500 at 105.336 kb on + strand, within CSW01_14500 at 105.440 kb on + strand at 105.448 kb on - strand at 105.631 kb on - strand at 105.644 kb on + strand, within CSW01_14505 at 105.652 kb on - strand, within CSW01_14505 at 105.652 kb on - strand, within CSW01_14505 at 105.679 kb on + strand, within CSW01_14505 at 105.901 kb on + strand, within CSW01_14505 at 105.920 kb on + strand, within CSW01_14505 at 105.928 kb on - strand, within CSW01_14505 at 105.933 kb on - strand, within CSW01_14505 at 105.947 kb on + strand, within CSW01_14505 at 105.950 kb on - strand, within CSW01_14505 at 105.950 kb on - strand, within CSW01_14505 at 105.955 kb on - strand, within CSW01_14505 at 105.989 kb on - strand, within CSW01_14505 at 106.084 kb on + strand, within CSW01_14505 at 106.096 kb on + strand, within CSW01_14505 at 106.103 kb on - strand, within CSW01_14505 at 106.106 kb on + strand, within CSW01_14505 at 106.205 kb on + strand, within CSW01_14505 at 106.222 kb on + strand, within CSW01_14505 at 106.244 kb on + strand, within CSW01_14505 at 106.295 kb on + strand, within CSW01_14505 at 106.295 kb on + strand, within CSW01_14505 at 106.303 kb on - strand, within CSW01_14505 at 106.392 kb on - strand, within CSW01_14505
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 104,350 - +1.5 104,360 - -0.4 104,360 - -2.7 104,360 - +0.7 104,378 + +0.7 104,476 - CSW01_14495 0.11 +1.0 104,476 - CSW01_14495 0.11 +1.1 104,616 + CSW01_14495 0.31 +0.9 104,616 + CSW01_14495 0.31 +0.9 104,616 + CSW01_14495 0.31 +1.9 104,624 - CSW01_14495 0.32 -2.8 104,624 - CSW01_14495 0.32 +2.3 104,639 + CSW01_14495 0.34 -0.9 104,853 + CSW01_14495 0.64 -1.4 104,861 - CSW01_14495 0.65 +0.1 105,079 + +0.8 105,089 + -1.1 105,124 + +1.1 105,132 - +0.5 105,132 - +0.8 105,192 + +0.0 105,207 + -0.7 105,207 + -1.4 105,207 + +0.6 105,207 + +0.8 105,207 + -2.8 105,207 + +0.5 105,215 - +0.6 105,215 - +0.7 105,215 - +2.5 105,215 - -1.6 105,226 + -0.9 105,266 + CSW01_14500 0.18 +0.8 105,267 + CSW01_14500 0.19 +0.2 105,336 + CSW01_14500 0.54 +0.6 105,336 + CSW01_14500 0.54 +2.0 105,440 + -1.2 105,448 - +0.7 105,631 - +1.3 105,644 + CSW01_14505 0.10 +0.5 105,652 - CSW01_14505 0.11 +0.8 105,652 - CSW01_14505 0.11 -0.1 105,679 + CSW01_14505 0.13 +0.7 105,901 + CSW01_14505 0.30 -2.4 105,920 + CSW01_14505 0.31 +0.4 105,928 - CSW01_14505 0.32 +3.1 105,933 - CSW01_14505 0.32 -0.3 105,947 + CSW01_14505 0.33 +0.4 105,950 - CSW01_14505 0.34 -2.4 105,950 - CSW01_14505 0.34 -2.1 105,955 - CSW01_14505 0.34 -2.5 105,989 - CSW01_14505 0.37 +2.3 106,084 + CSW01_14505 0.44 -3.9 106,096 + CSW01_14505 0.45 +0.5 106,103 - CSW01_14505 0.45 +0.3 106,106 + CSW01_14505 0.45 -2.3 106,205 + CSW01_14505 0.53 +1.4 106,222 + CSW01_14505 0.54 -0.2 106,244 + CSW01_14505 0.56 -1.1 106,295 + CSW01_14505 0.60 -2.1 106,295 + CSW01_14505 0.60 -1.1 106,303 - CSW01_14505 0.61 +0.3 106,392 - CSW01_14505 0.67 +0.4
Or see this region's nucleotide sequence