Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14240 and CSW01_14245 overlap by 4 nucleotides CSW01_14245 and CSW01_14250 are separated by 198 nucleotides CSW01_14250 and CSW01_14255 are separated by 538 nucleotides
CSW01_14240: CSW01_14240 - SCO family protein, at 46,103 to 46,684
_14240
CSW01_14245: CSW01_14245 - hypothetical protein, at 46,681 to 47,103
_14245
CSW01_14250: CSW01_14250 - DUF368 domain-containing protein, at 47,302 to 48,228
_14250
CSW01_14255: CSW01_14255 - sodium/glutamate symporter, at 48,767 to 49,993
_14255
Position (kb) 47
48
49 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 46.389 kb on - strand, within CSW01_14240 at 46.391 kb on + strand, within CSW01_14240 at 46.391 kb on + strand, within CSW01_14240 at 46.436 kb on + strand, within CSW01_14240 at 46.436 kb on + strand, within CSW01_14240 at 46.436 kb on + strand, within CSW01_14240 at 46.444 kb on - strand, within CSW01_14240 at 46.444 kb on - strand, within CSW01_14240 at 46.477 kb on + strand, within CSW01_14240 at 46.477 kb on + strand, within CSW01_14240 at 46.477 kb on + strand, within CSW01_14240 at 46.485 kb on - strand, within CSW01_14240 at 46.485 kb on - strand, within CSW01_14240 at 46.485 kb on - strand, within CSW01_14240 at 46.497 kb on - strand, within CSW01_14240 at 46.571 kb on + strand, within CSW01_14240 at 46.571 kb on + strand, within CSW01_14240 at 46.576 kb on + strand, within CSW01_14240 at 46.581 kb on + strand, within CSW01_14240 at 46.589 kb on - strand, within CSW01_14240 at 46.589 kb on - strand, within CSW01_14240 at 46.712 kb on - strand at 46.787 kb on + strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.797 kb on - strand, within CSW01_14245 at 46.902 kb on - strand, within CSW01_14245 at 46.928 kb on + strand, within CSW01_14245 at 46.945 kb on + strand, within CSW01_14245 at 47.095 kb on + strand at 47.129 kb on + strand at 47.261 kb on - strand at 47.283 kb on - strand at 47.286 kb on + strand at 47.656 kb on + strand, within CSW01_14250 at 47.874 kb on + strand, within CSW01_14250 at 48.067 kb on + strand, within CSW01_14250 at 48.301 kb on + strand at 48.509 kb on + strand at 48.694 kb on + strand at 48.694 kb on + strand at 48.702 kb on - strand at 48.721 kb on - strand at 48.799 kb on - strand at 48.934 kb on - strand, within CSW01_14255 at 49.018 kb on + strand, within CSW01_14255 at 49.033 kb on + strand, within CSW01_14255 at 49.041 kb on - strand, within CSW01_14255 at 49.099 kb on - strand, within CSW01_14255 at 49.124 kb on + strand, within CSW01_14255 at 49.132 kb on - strand, within CSW01_14255 at 49.164 kb on + strand, within CSW01_14255 at 49.172 kb on - strand, within CSW01_14255 at 49.172 kb on - strand, within CSW01_14255 at 49.174 kb on + strand, within CSW01_14255 at 49.194 kb on - strand, within CSW01_14255
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 46,389 - CSW01_14240 0.49 -2.3 46,391 + CSW01_14240 0.49 +1.2 46,391 + CSW01_14240 0.49 -1.5 46,436 + CSW01_14240 0.57 -2.6 46,436 + CSW01_14240 0.57 -0.1 46,436 + CSW01_14240 0.57 -1.7 46,444 - CSW01_14240 0.59 +0.3 46,444 - CSW01_14240 0.59 +1.1 46,477 + CSW01_14240 0.64 -2.1 46,477 + CSW01_14240 0.64 +0.6 46,477 + CSW01_14240 0.64 -0.5 46,485 - CSW01_14240 0.66 -0.0 46,485 - CSW01_14240 0.66 +0.2 46,485 - CSW01_14240 0.66 -0.4 46,497 - CSW01_14240 0.68 +1.3 46,571 + CSW01_14240 0.80 +1.5 46,571 + CSW01_14240 0.80 -2.0 46,576 + CSW01_14240 0.81 +1.0 46,581 + CSW01_14240 0.82 -2.3 46,589 - CSW01_14240 0.84 -0.2 46,589 - CSW01_14240 0.84 +0.3 46,712 - +0.5 46,787 + CSW01_14245 0.25 +0.9 46,797 - CSW01_14245 0.27 +0.9 46,797 - CSW01_14245 0.27 -1.1 46,797 - CSW01_14245 0.27 +1.4 46,797 - CSW01_14245 0.27 +0.5 46,797 - CSW01_14245 0.27 +0.1 46,797 - CSW01_14245 0.27 -0.2 46,902 - CSW01_14245 0.52 -2.3 46,928 + CSW01_14245 0.58 -1.3 46,945 + CSW01_14245 0.62 +1.9 47,095 + +2.3 47,129 + +0.1 47,261 - -1.5 47,283 - +0.3 47,286 + -0.1 47,656 + CSW01_14250 0.38 +3.3 47,874 + CSW01_14250 0.62 +2.7 48,067 + CSW01_14250 0.83 +0.6 48,301 + -0.6 48,509 + +0.5 48,694 + +0.7 48,694 + +1.0 48,702 - -3.0 48,721 - -1.9 48,799 - +0.2 48,934 - CSW01_14255 0.14 -3.3 49,018 + CSW01_14255 0.20 -0.3 49,033 + CSW01_14255 0.22 -0.5 49,041 - CSW01_14255 0.22 +0.6 49,099 - CSW01_14255 0.27 -2.3 49,124 + CSW01_14255 0.29 +1.0 49,132 - CSW01_14255 0.30 -0.7 49,164 + CSW01_14255 0.32 +0.6 49,172 - CSW01_14255 0.33 -2.1 49,172 - CSW01_14255 0.33 +1.2 49,174 + CSW01_14255 0.33 -1.1 49,194 - CSW01_14255 0.35 -0.7
Or see this region's nucleotide sequence