Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13820

Experiment: ICP1_phage_0.23_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep1
2,944,185	-		CSW01_13815	0.49	+0.3
2,944,192	+		CSW01_13815	0.50	-0.5
2,944,192	+		CSW01_13815	0.50	-2.6
2,944,192	+		CSW01_13815	0.50	+1.6
2,944,192	+		CSW01_13815	0.50	-2.8
2,944,228	+		CSW01_13815	0.52	+0.9
2,944,233	+		CSW01_13815	0.52	-2.8
2,944,236	-		CSW01_13815	0.52	+1.5
2,944,238	+		CSW01_13815	0.52	-2.9
2,944,238	+		CSW01_13815	0.52	-2.2
2,944,238	+		CSW01_13815	0.52	-2.8
2,944,238	+		CSW01_13815	0.52	-0.6
2,944,238	+		CSW01_13815	0.52	-2.4
2,944,238	+		CSW01_13815	0.52	-2.4
2,944,246	-		CSW01_13815	0.53	+1.4
2,944,246	-		CSW01_13815	0.53	+0.8
2,944,246	-		CSW01_13815	0.53	+1.4
2,944,246	-		CSW01_13815	0.53	+1.1
2,944,325	+		CSW01_13815	0.57	-1.1
2,944,326	+		CSW01_13815	0.57	-0.1
2,944,351	-		CSW01_13815	0.58	-1.0
2,944,435	+		CSW01_13815	0.63	-0.9
2,944,443	-		CSW01_13815	0.63	+0.7
2,944,471	+		CSW01_13815	0.65	+0.1
2,944,471	+		CSW01_13815	0.65	+1.3
2,944,479	-		CSW01_13815	0.65	+0.7
2,944,503	+		CSW01_13815	0.66	-2.7
2,944,503	+		CSW01_13815	0.66	-2.2
2,944,503	+		CSW01_13815	0.66	-1.3
2,944,503	+		CSW01_13815	0.66	-4.7
2,944,511	-		CSW01_13815	0.67	+0.6
2,944,511	-		CSW01_13815	0.67	-2.4
2,944,511	-		CSW01_13815	0.67	-1.0
2,944,511	-		CSW01_13815	0.67	+1.0
2,944,537	+		CSW01_13815	0.68	+1.5
2,944,545	-		CSW01_13815	0.69	-0.7
2,944,550	-		CSW01_13815	0.69	-0.1
2,944,555	+		CSW01_13815	0.69	+0.0
2,944,563	-		CSW01_13815	0.69	+1.2
2,944,588	+		CSW01_13815	0.71	+2.4
2,944,596	-		CSW01_13815	0.71	-0.3
2,944,609	+		CSW01_13815	0.72	-2.5
2,944,697	+		CSW01_13815	0.77	+0.8
2,944,857	+		CSW01_13815	0.85	-2.3
2,944,857	+		CSW01_13815	0.85	+1.5
2,944,857	+		CSW01_13815	0.85	+1.3
2,944,865	-		CSW01_13815	0.85	-0.2
2,944,865	-		CSW01_13815	0.85	+0.3
2,944,865	-		CSW01_13815	0.85	+0.8
2,944,884	-		CSW01_13815	0.86	+1.1
2,944,940	-		CSW01_13815	0.89	+0.4
2,944,962	-				-3.4
2,944,962	-				+0.5
2,944,962	-				-1.1
2,944,999	-				+0.1
2,945,012	+				+0.7
2,945,012	+				-2.1
2,945,020	-				-1.8
2,945,022	+				-0.3
2,945,030	-				-1.7
2,945,054	+				-2.7
2,945,076	+				-0.5
2,945,076	+				+2.8
2,945,077	-				+0.3
2,945,084	-				-0.1
2,945,111	-				-1.7
2,945,126	-				+0.5
2,945,141	-				+1.1
2,945,224	+				+0.9
2,945,379	-		CSW01_13820	0.21	+2.0
2,945,405	-		CSW01_13820	0.24	-0.4
2,945,418	-		CSW01_13820	0.26	+1.1
2,945,444	-		CSW01_13820	0.28	-2.7
2,945,456	+		CSW01_13820	0.30	+1.7
2,945,471	-		CSW01_13820	0.31	+0.4
2,945,473	-		CSW01_13820	0.31	+1.4
2,945,488	-		CSW01_13820	0.33	-1.8
2,945,493	-		CSW01_13820	0.34	+1.8
2,945,505	+		CSW01_13820	0.35	+1.4
2,945,526	+		CSW01_13820	0.37	-1.6
2,945,534	-		CSW01_13820	0.38	+1.0
2,945,543	+		CSW01_13820	0.39	-1.8
2,945,543	+		CSW01_13820	0.39	-1.1
2,945,551	-		CSW01_13820	0.40	+0.6
2,945,570	-		CSW01_13820	0.42	-0.1
2,945,597	+		CSW01_13820	0.45	-1.5
2,945,605	-		CSW01_13820	0.46	+1.1
2,945,632	+		CSW01_13820	0.48	-0.1
2,945,639	-		CSW01_13820	0.49	+1.6
2,945,646	+		CSW01_13820	0.50	-3.9
2,945,654	-		CSW01_13820	0.51	-1.9
2,945,654	-		CSW01_13820	0.51	-2.4
2,945,815	+		CSW01_13820	0.68	-1.7
2,945,823	-		CSW01_13820	0.69	-3.8
2,945,832	-		CSW01_13820	0.70	+0.7
2,945,849	+		CSW01_13820	0.72	-1.4
2,945,856	-		CSW01_13820	0.72	+0.8
2,945,857	-		CSW01_13820	0.73	+2.1
2,945,914	+		CSW01_13820	0.79	-2.8
2,945,954	+		CSW01_13820	0.83	-0.2
2,945,962	-		CSW01_13820	0.84	-3.1
2,946,001	+		CSW01_13820	0.88	-2.1
2,946,009	-		CSW01_13820	0.89	+1.3
2,946,030	-				+1.4
2,946,124	-				+0.8
2,946,131	+				-0.3
2,946,177	+				+1.6
2,946,288	-		CSW01_13825	0.25	-2.3
2,946,319	+		CSW01_13825	0.32	+0.6
2,946,327	-		CSW01_13825	0.34	+1.3
2,946,327	-		CSW01_13825	0.34	+0.2
2,946,327	-		CSW01_13825	0.34	+1.8
2,946,388	+		CSW01_13825	0.48	+0.5
2,946,397	-		CSW01_13825	0.50	+0.4
2,946,397	-		CSW01_13825	0.50	-3.2
2,946,409	-		CSW01_13825	0.53	-3.6
2,946,436	-		CSW01_13825	0.59	+0.7
2,946,436	-		CSW01_13825	0.59	-2.5
2,946,446	-		CSW01_13825	0.61	-2.0
2,946,454	+		CSW01_13825	0.63	+0.5
2,946,454	+		CSW01_13825	0.63	+1.7
2,946,462	-		CSW01_13825	0.65	+0.6
2,946,462	-		CSW01_13825	0.65	-2.1
2,946,529	-		CSW01_13825	0.80	-2.3
2,946,664	+				+1.4
2,946,672	-				+1.7
2,946,685	+				+1.7
2,946,693	-				-1.7
2,946,701	-				-0.1
2,946,701	-				-1.8
2,946,701	-				+0.2
2,946,706	-				-1.4
2,946,720	+				+0.5
2,946,728	-		CSW01_13830	0.11	-1.8
2,946,728	-		CSW01_13830	0.11	-3.5
2,946,728	-		CSW01_13830	0.11	-1.0
2,946,728	-		CSW01_13830	0.11	-0.5
2,946,733	-		CSW01_13830	0.11	+0.0
2,946,791	-		CSW01_13830	0.18	-2.8
2,946,793	+		CSW01_13830	0.18	+0.7
2,946,822	+		CSW01_13830	0.21	+1.6
2,946,930	+		CSW01_13830	0.33	-0.8
2,946,930	+		CSW01_13830	0.33	+1.3
2,946,930	+		CSW01_13830	0.33	+0.1
2,946,930	+		CSW01_13830	0.33	+0.5
2,946,931	+		CSW01_13830	0.34	-2.9
2,946,938	-		CSW01_13830	0.34	+0.4
2,946,950	+		CSW01_13830	0.36	-0.3
2,946,950	+		CSW01_13830	0.36	-2.9
2,946,950	+		CSW01_13830	0.36	+0.4
2,946,950	+		CSW01_13830	0.36	-1.6
2,946,958	-		CSW01_13830	0.37	-1.1
2,946,958	-		CSW01_13830	0.37	+0.2
2,946,960	+		CSW01_13830	0.37	+2.0
2,946,986	+		CSW01_13830	0.40	+2.2
2,946,988	+		CSW01_13830	0.40	+1.0
2,947,094	+		CSW01_13830	0.52	-0.8