Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07730

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07725 and CSW01_07730 are separated by 157 nucleotidesCSW01_07730 and CSW01_07735 are separated by 254 nucleotides CSW01_07725: CSW01_07725 - fructosamine kinase family protein, at 1,649,611 to 1,650,477 _07725 CSW01_07730: CSW01_07730 - CPXCG motif-containing cysteine-rich protein, at 1,650,635 to 1,650,838 _07730 CSW01_07735: CSW01_07735 - multidrug resistance protein NorM, at 1,651,093 to 1,652,466 _07735 Position (kb) 1650 1651Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1649.701 kb on + strand, within CSW01_07725at 1649.716 kb on - strand, within CSW01_07725at 1649.814 kb on + strand, within CSW01_07725at 1649.814 kb on + strand, within CSW01_07725at 1649.814 kb on + strand, within CSW01_07725at 1649.842 kb on + strand, within CSW01_07725at 1649.870 kb on + strand, within CSW01_07725at 1649.958 kb on + strand, within CSW01_07725at 1649.960 kb on + strand, within CSW01_07725at 1649.968 kb on - strand, within CSW01_07725at 1650.021 kb on + strand, within CSW01_07725at 1650.021 kb on + strand, within CSW01_07725at 1650.021 kb on + strand, within CSW01_07725at 1650.029 kb on - strand, within CSW01_07725at 1650.069 kb on - strand, within CSW01_07725at 1650.141 kb on + strand, within CSW01_07725at 1650.141 kb on + strand, within CSW01_07725at 1650.176 kb on + strand, within CSW01_07725at 1650.176 kb on + strand, within CSW01_07725at 1650.184 kb on - strand, within CSW01_07725at 1650.184 kb on - strand, within CSW01_07725at 1650.305 kb on - strand, within CSW01_07725at 1650.336 kb on - strand, within CSW01_07725at 1650.407 kb on + strandat 1650.598 kb on + strandat 1650.670 kb on + strand, within CSW01_07730at 1650.670 kb on + strand, within CSW01_07730at 1650.733 kb on + strand, within CSW01_07730at 1650.803 kb on - strand, within CSW01_07730at 1651.070 kb on - strandat 1651.179 kb on - strandat 1651.314 kb on + strand, within CSW01_07735at 1651.314 kb on + strand, within CSW01_07735at 1651.314 kb on + strand, within CSW01_07735at 1651.352 kb on + strand, within CSW01_07735at 1651.371 kb on - strand, within CSW01_07735at 1651.475 kb on + strand, within CSW01_07735at 1651.508 kb on + strand, within CSW01_07735at 1651.518 kb on + strand, within CSW01_07735at 1651.518 kb on + strand, within CSW01_07735at 1651.565 kb on - strand, within CSW01_07735at 1651.565 kb on - strand, within CSW01_07735at 1651.650 kb on + strand, within CSW01_07735at 1651.656 kb on - strand, within CSW01_07735at 1651.724 kb on - strand, within CSW01_07735at 1651.814 kb on + strand, within CSW01_07735

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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1,649,701 + CSW01_07725 0.10 +0.1
1,649,716 - CSW01_07725 0.12 -0.3
1,649,814 + CSW01_07725 0.23 -0.4
1,649,814 + CSW01_07725 0.23 +0.2
1,649,814 + CSW01_07725 0.23 +0.2
1,649,842 + CSW01_07725 0.27 -1.5
1,649,870 + CSW01_07725 0.30 -0.3
1,649,958 + CSW01_07725 0.40 +0.1
1,649,960 + CSW01_07725 0.40 -1.2
1,649,968 - CSW01_07725 0.41 +1.5
1,650,021 + CSW01_07725 0.47 -1.0
1,650,021 + CSW01_07725 0.47 +2.1
1,650,021 + CSW01_07725 0.47 -1.6
1,650,029 - CSW01_07725 0.48 -0.6
1,650,069 - CSW01_07725 0.53 +1.0
1,650,141 + CSW01_07725 0.61 -2.1
1,650,141 + CSW01_07725 0.61 +1.2
1,650,176 + CSW01_07725 0.65 +1.1
1,650,176 + CSW01_07725 0.65 +1.0
1,650,184 - CSW01_07725 0.66 -2.4
1,650,184 - CSW01_07725 0.66 +1.1
1,650,305 - CSW01_07725 0.80 +0.2
1,650,336 - CSW01_07725 0.84 +0.0
1,650,407 + -1.9
1,650,598 + +0.1
1,650,670 + CSW01_07730 0.17 -1.6
1,650,670 + CSW01_07730 0.17 -0.9
1,650,733 + CSW01_07730 0.48 -1.8
1,650,803 - CSW01_07730 0.82 -0.3
1,651,070 - +1.4
1,651,179 - -0.7
1,651,314 + CSW01_07735 0.16 +0.2
1,651,314 + CSW01_07735 0.16 -2.4
1,651,314 + CSW01_07735 0.16 +1.1
1,651,352 + CSW01_07735 0.19 -1.1
1,651,371 - CSW01_07735 0.20 +0.2
1,651,475 + CSW01_07735 0.28 -1.0
1,651,508 + CSW01_07735 0.30 +0.5
1,651,518 + CSW01_07735 0.31 -0.9
1,651,518 + CSW01_07735 0.31 -0.1
1,651,565 - CSW01_07735 0.34 -3.1
1,651,565 - CSW01_07735 0.34 +0.4
1,651,650 + CSW01_07735 0.41 -0.5
1,651,656 - CSW01_07735 0.41 -2.0
1,651,724 - CSW01_07735 0.46 -1.4
1,651,814 + CSW01_07735 0.52 +0.2

Or see this region's nucleotide sequence