Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07315

Experiment: ICP1_phage_0.23_MOI_rep1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_0.23_MOI_rep1
1,565,992	+		CSW01_07305	0.73	-0.9
1,566,044	+		CSW01_07305	0.87	+0.7
1,566,045	-		CSW01_07305	0.87	-0.5
1,566,109	+				-0.0
1,566,185	+		CSW01_07310	0.12	-0.9
1,566,220	+		CSW01_07310	0.17	-1.2
1,566,228	-		CSW01_07310	0.18	-0.3
1,566,228	-		CSW01_07310	0.18	-4.2
1,566,230	+		CSW01_07310	0.18	-0.0
1,566,236	+		CSW01_07310	0.19	-1.8
1,566,237	+		CSW01_07310	0.19	-1.5
1,566,237	+		CSW01_07310	0.19	-0.2
1,566,238	-		CSW01_07310	0.19	-0.8
1,566,245	-		CSW01_07310	0.20	-0.9
1,566,245	-		CSW01_07310	0.20	+0.2
1,566,255	+		CSW01_07310	0.21	-1.4
1,566,255	+		CSW01_07310	0.21	+0.7
1,566,263	-		CSW01_07310	0.22	-0.6
1,566,263	-		CSW01_07310	0.22	-0.0
1,566,263	-		CSW01_07310	0.22	+0.8
1,566,263	-		CSW01_07310	0.22	-0.2
1,566,263	-		CSW01_07310	0.22	+1.3
1,566,263	-		CSW01_07310	0.22	-0.7
1,566,263	-		CSW01_07310	0.22	+2.1
1,566,271	-		CSW01_07310	0.23	-0.3
1,566,281	+		CSW01_07310	0.25	+0.7
1,566,282	-		CSW01_07310	0.25	+1.0
1,566,282	-		CSW01_07310	0.25	+1.2
1,566,282	-		CSW01_07310	0.25	+1.7
1,566,282	-		CSW01_07310	0.25	+0.4
1,566,288	+		CSW01_07310	0.25	+0.9
1,566,289	-		CSW01_07310	0.26	+2.2
1,566,289	-		CSW01_07310	0.26	-0.4
1,566,289	-		CSW01_07310	0.26	-2.2
1,566,295	+		CSW01_07310	0.26	-2.5
1,566,295	+		CSW01_07310	0.26	-0.7
1,566,303	-		CSW01_07310	0.27	+0.3
1,566,303	-		CSW01_07310	0.27	+0.3
1,566,303	-		CSW01_07310	0.27	+0.8
1,566,303	-		CSW01_07310	0.27	+0.6
1,566,303	-		CSW01_07310	0.27	+0.4
1,566,303	-		CSW01_07310	0.27	+1.1
1,566,303	-		CSW01_07310	0.27	+0.2
1,566,303	-		CSW01_07310	0.27	+0.6
1,566,303	-		CSW01_07310	0.27	+0.6
1,566,316	-		CSW01_07310	0.29	+1.1
1,566,323	+		CSW01_07310	0.30	-0.9
1,566,325	-		CSW01_07310	0.30	-0.4
1,566,327	+		CSW01_07310	0.31	+0.4
1,566,368	+		CSW01_07310	0.36	+0.2
1,566,368	+		CSW01_07310	0.36	+1.1
1,566,376	+		CSW01_07310	0.37	-2.8
1,566,387	+		CSW01_07310	0.38	+2.6
1,566,393	+		CSW01_07310	0.39	+0.1
1,566,401	-		CSW01_07310	0.40	-2.0
1,566,421	-		CSW01_07310	0.43	-0.6
1,566,452	+		CSW01_07310	0.47	+0.0
1,566,462	+		CSW01_07310	0.48	+1.9
1,566,462	+		CSW01_07310	0.48	+2.4
1,566,476	+		CSW01_07310	0.50	+0.8
1,566,491	+		CSW01_07310	0.52	-2.4
1,566,496	+		CSW01_07310	0.52	+1.5
1,566,496	+		CSW01_07310	0.52	+1.5
1,566,496	+		CSW01_07310	0.52	-1.5
1,566,496	+		CSW01_07310	0.52	-0.8
1,566,496	+		CSW01_07310	0.52	+1.1
1,566,499	+		CSW01_07310	0.53	+0.3
1,566,499	-		CSW01_07310	0.53	+0.0
1,566,499	-		CSW01_07310	0.53	+0.4
1,566,504	-		CSW01_07310	0.53	+1.5
1,566,504	-		CSW01_07310	0.53	-0.8
1,566,504	-		CSW01_07310	0.53	+0.8
1,566,507	-		CSW01_07310	0.54	+2.6
1,566,515	-		CSW01_07310	0.55	+0.5
1,566,525	-		CSW01_07310	0.56	-0.4
1,566,562	-		CSW01_07310	0.61	+2.7
1,566,602	+		CSW01_07310	0.66	+0.7
1,566,612	+		CSW01_07310	0.67	+0.9
1,566,654	+		CSW01_07310	0.73	-0.2
1,566,662	-		CSW01_07310	0.74	-0.2
1,566,673	+		CSW01_07310	0.75	+0.3
1,566,676	-		CSW01_07310	0.75	-0.5
1,566,685	+		CSW01_07310	0.77	+2.1
1,566,685	+		CSW01_07310	0.77	+0.8
1,566,693	-		CSW01_07310	0.78	+0.4
1,566,693	-		CSW01_07310	0.78	+1.6
1,566,694	-		CSW01_07310	0.78	+0.9
1,566,700	-		CSW01_07310	0.79	-1.6
1,566,710	-		CSW01_07310	0.80	+0.9
1,566,710	-		CSW01_07310	0.80	-3.8
1,566,717	+		CSW01_07310	0.81	-3.0
1,566,723	+		CSW01_07310	0.81	-1.6
1,566,723	+		CSW01_07310	0.81	+0.5
1,566,729	+		CSW01_07310	0.82	-3.0
1,566,730	+		CSW01_07310	0.82	-2.3
1,566,731	-		CSW01_07310	0.82	-2.6
1,566,732	+		CSW01_07310	0.83	-2.9
1,566,734	+		CSW01_07310	0.83	+0.5
1,566,734	+		CSW01_07310	0.83	-1.8
1,566,734	+		CSW01_07310	0.83	+0.8
1,566,734	+		CSW01_07310	0.83	-2.5
1,566,742	-		CSW01_07310	0.84	-2.5
1,566,742	-		CSW01_07310	0.84	+0.1
1,566,742	-		CSW01_07310	0.84	-0.2
1,566,743	+		CSW01_07310	0.84	-3.7
1,566,743	+		CSW01_07310	0.84	+0.8
1,566,743	+		CSW01_07310	0.84	-2.2
1,566,743	+		CSW01_07310	0.84	+1.5
1,566,743	+		CSW01_07310	0.84	+0.8
1,566,743	+		CSW01_07310	0.84	+0.7
1,566,743	+		CSW01_07310	0.84	+1.2
1,566,744	-		CSW01_07310	0.84	+0.3
1,566,751	-		CSW01_07310	0.85	-1.2
1,566,751	-		CSW01_07310	0.85	+1.5
1,566,751	-		CSW01_07310	0.85	+1.1
1,566,751	-		CSW01_07310	0.85	-1.5
1,566,751	-		CSW01_07310	0.85	-1.5
1,566,762	-		CSW01_07310	0.86	+0.7
1,566,778	+		CSW01_07310	0.89	-3.9
1,566,786	-		CSW01_07310	0.90	+1.7
1,567,027	+				-3.1
1,567,029	-				-0.1
1,567,035	-				-3.0
1,567,035	-				+0.2
1,567,035	-				-1.3
1,567,040	-				-2.8
1,567,048	+				+1.0
1,567,048	+				-1.7
1,567,048	+				-0.9
1,567,055	+				-0.5
1,567,055	+				+0.7
1,567,056	+				+0.7
1,567,056	+				+0.2
1,567,056	+				-0.2
1,567,056	+				+0.9
1,567,056	-				-0.4
1,567,064	-				-0.1
1,567,064	-				+1.2
1,567,066	+				-0.5
1,567,066	+				+0.9
1,567,074	-				+1.1
1,567,091	+		CSW01_07315	0.10	+0.7
1,567,091	+		CSW01_07315	0.10	+0.5
1,567,091	+		CSW01_07315	0.10	-2.2
1,567,091	+		CSW01_07315	0.10	-1.2
1,567,091	+		CSW01_07315	0.10	+0.5
1,567,091	+		CSW01_07315	0.10	-1.8
1,567,091	+		CSW01_07315	0.10	+2.3
1,567,091	+		CSW01_07315	0.10	-2.4
1,567,091	+		CSW01_07315	0.10	-0.4
1,567,091	+		CSW01_07315	0.10	+1.2
1,567,099	-		CSW01_07315	0.11	-1.7
1,567,099	-		CSW01_07315	0.11	-0.5
1,567,099	-		CSW01_07315	0.11	-2.1
1,567,099	-		CSW01_07315	0.11	-1.5
1,567,099	-		CSW01_07315	0.11	+1.0
1,567,106	-		CSW01_07315	0.12	+1.6
1,567,106	-		CSW01_07315	0.12	-1.1
1,567,107	-		CSW01_07315	0.12	+0.5
1,567,121	+		CSW01_07315	0.13	+0.5
1,567,129	+		CSW01_07315	0.14	+1.7
1,567,134	-		CSW01_07315	0.14	-1.8
1,567,134	-		CSW01_07315	0.14	-0.5
1,567,139	-		CSW01_07315	0.14	+0.7
1,567,139	-		CSW01_07315	0.14	+1.7
1,567,194	+		CSW01_07315	0.19	-0.1
1,567,209	-		CSW01_07315	0.20	+0.4
1,567,256	-		CSW01_07315	0.24	+1.5
1,567,331	+		CSW01_07315	0.30	+2.3
1,567,334	+		CSW01_07315	0.31	-1.2
1,567,343	+		CSW01_07315	0.32	+1.8
1,567,358	-		CSW01_07315	0.33	-3.0
1,567,378	+		CSW01_07315	0.34	-0.9
1,567,386	-		CSW01_07315	0.35	+1.1
1,567,386	-		CSW01_07315	0.35	-0.9
1,567,487	+		CSW01_07315	0.43	-2.0
1,567,547	-		CSW01_07315	0.48	-0.4
1,567,618	+		CSW01_07315	0.54	-2.5
1,567,618	+		CSW01_07315	0.54	+1.9
1,567,618	+		CSW01_07315	0.54	+1.5
1,567,618	+		CSW01_07315	0.54	+0.5
1,567,618	+		CSW01_07315	0.54	-0.4
1,567,626	-		CSW01_07315	0.55	-2.4
1,567,626	-		CSW01_07315	0.55	+1.7
1,567,641	-		CSW01_07315	0.56	-1.3
1,567,648	+		CSW01_07315	0.57	+0.8
1,567,648	+		CSW01_07315	0.57	+2.8
1,567,656	-		CSW01_07315	0.58	+2.1
1,567,656	-		CSW01_07315	0.58	-1.4
1,567,656	-		CSW01_07315	0.58	+0.6
1,567,656	-		CSW01_07315	0.58	+0.5
1,567,732	-		CSW01_07315	0.64	-0.6
1,567,795	-		CSW01_07315	0.69	-2.1
1,567,798	+		CSW01_07315	0.69	+0.6
1,567,798	+		CSW01_07315	0.69	+1.0
1,567,798	+		CSW01_07315	0.69	-0.5
1,567,806	-		CSW01_07315	0.70	-0.7
1,567,806	-		CSW01_07315	0.70	-0.7
1,567,820	-		CSW01_07315	0.71	-1.2
1,567,842	+		CSW01_07315	0.73	+2.1
1,567,852	+		CSW01_07315	0.74	-1.8
1,567,965	+		CSW01_07315	0.83	+0.0
1,567,972	+		CSW01_07315	0.84	-1.3
1,567,972	+		CSW01_07315	0.84	+1.0
1,567,973	+		CSW01_07315	0.84	-2.4
1,567,980	-		CSW01_07315	0.85	-0.7
1,567,998	-		CSW01_07315	0.86	+1.1
1,568,029	-		CSW01_07315	0.89	+0.3
1,568,035	+		CSW01_07315	0.89	+2.0
1,568,041	+		CSW01_07315	0.90	+1.3
1,568,041	+		CSW01_07315	0.90	+0.9
1,568,050	-				-1.5
1,568,166	+				-0.2
1,568,166	+				+0.2
1,568,189	-				+0.1
1,568,189	-				-2.2
1,568,221	+		CSW01_07320	0.20	+0.2
1,568,235	-		CSW01_07320	0.25	+3.2
1,568,235	-		CSW01_07320	0.25	+1.5
1,568,257	+		CSW01_07320	0.33	+2.0
1,568,257	+		CSW01_07320	0.33	-0.8
1,568,257	+		CSW01_07320	0.33	+0.1
1,568,265	-		CSW01_07320	0.35	+0.3
1,568,265	-		CSW01_07320	0.35	-0.2
1,568,376	+		CSW01_07320	0.73	-2.7
1,568,376	+		CSW01_07320	0.73	+0.8
1,568,376	+		CSW01_07320	0.73	-2.2
1,568,376	+		CSW01_07320	0.73	+0.5
1,568,425	+				+2.0
1,568,433	+				-4.0
1,568,433	-				+0.8
1,568,455	-				-3.6
1,568,455	-				+1.4
1,568,488	-				+3.1
1,568,543	+				-1.5
1,568,548	+				-1.8
1,568,548	+				+0.1
1,568,556	-				+0.4
1,568,608	+		CSW01_07325	0.12	-1.4
1,568,608	+		CSW01_07325	0.12	-0.3
1,568,616	-		CSW01_07325	0.13	+1.9
1,568,627	-		CSW01_07325	0.14	+1.2
1,568,719	+		CSW01_07325	0.21	-1.8
1,568,726	+		CSW01_07325	0.21	-0.3
1,568,783	+		CSW01_07325	0.26	+0.6
1,568,791	+		CSW01_07325	0.26	+1.5
1,568,806	-		CSW01_07325	0.28	+1.0
1,568,812	+		CSW01_07325	0.28	+0.2
1,568,860	+		CSW01_07325	0.32	-0.6
1,568,870	+		CSW01_07325	0.33	+0.0
1,568,870	+		CSW01_07325	0.33	-1.2
1,568,870	+		CSW01_07325	0.33	-0.4
1,568,870	+		CSW01_07325	0.33	-2.3
1,568,875	+		CSW01_07325	0.33	-1.4
1,568,875	+		CSW01_07325	0.33	+0.3
1,568,875	+		CSW01_07325	0.33	+1.1
1,568,878	-		CSW01_07325	0.33	+0.8
1,568,883	-		CSW01_07325	0.34	+0.2
1,568,883	-		CSW01_07325	0.34	-0.5
1,568,883	-		CSW01_07325	0.34	+0.6
1,568,883	-		CSW01_07325	0.34	+0.5
1,568,907	+		CSW01_07325	0.36	-0.0
1,568,909	-		CSW01_07325	0.36	+0.3
1,568,915	-		CSW01_07325	0.36	-1.7
1,568,936	+		CSW01_07325	0.38	-2.0
1,568,961	+		CSW01_07325	0.40	+1.4
1,568,989	+		CSW01_07325	0.42	-0.5
1,568,991	-		CSW01_07325	0.42	+0.7
1,569,086	-		CSW01_07325	0.49	-1.5
1,569,154	-		CSW01_07325	0.55	+0.5