Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_05165

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_05160 and CSW01_05165 overlap by 1 nucleotidesCSW01_05165 and CSW01_05170 overlap by 73 nucleotidesCSW01_05170 and CSW01_05175 overlap by 1 nucleotides CSW01_05160: CSW01_05160 - electron transport complex subunit D, at 1,081,101 to 1,082,147 _05160 CSW01_05165: CSW01_05165 - electron transport complex subunit RsxC, at 1,082,147 to 1,084,552 _05165 CSW01_05170: CSW01_05170 - electron transport complex subunit B, at 1,084,480 to 1,085,067 _05170 CSW01_05175: CSW01_05175 - electron transport complex subunit A, at 1,085,067 to 1,085,648 _05175 Position (kb) 1082 1083 1084 1085Strain fitness (log2 ratio) -2 -1 0 1at 1082.269 kb on - strandat 1082.518 kb on - strand, within CSW01_05165at 1082.638 kb on - strand, within CSW01_05165at 1082.638 kb on - strand, within CSW01_05165at 1084.573 kb on - strand, within CSW01_05170

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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1,082,269 - +0.3
1,082,518 - CSW01_05165 0.15 +0.1
1,082,638 - CSW01_05165 0.20 -1.3
1,082,638 - CSW01_05165 0.20 -2.7
1,084,573 - CSW01_05170 0.16 +1.1

Or see this region's nucleotide sequence