Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04775

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04770 and CSW01_04775 are separated by 154 nucleotidesCSW01_04775 and CSW01_04780 are separated by 175 nucleotides CSW01_04770: CSW01_04770 - hemolysin, at 992,367 to 995,240 _04770 CSW01_04775: CSW01_04775 - polymerase, at 995,395 to 996,711 _04775 CSW01_04780: CSW01_04780 - hypothetical protein, at 996,887 to 997,492 _04780 Position (kb) 995 996 997Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 994.450 kb on - strand, within CSW01_04770at 994.540 kb on - strand, within CSW01_04770at 994.578 kb on + strand, within CSW01_04770at 994.593 kb on + strand, within CSW01_04770at 994.601 kb on - strand, within CSW01_04770at 994.653 kb on - strand, within CSW01_04770at 994.672 kb on + strand, within CSW01_04770at 994.672 kb on + strand, within CSW01_04770at 994.680 kb on + strand, within CSW01_04770at 994.717 kb on + strand, within CSW01_04770at 994.727 kb on + strand, within CSW01_04770at 994.816 kb on + strand, within CSW01_04770at 994.818 kb on + strand, within CSW01_04770at 994.818 kb on + strand, within CSW01_04770at 994.826 kb on - strand, within CSW01_04770at 994.850 kb on + strand, within CSW01_04770at 994.850 kb on + strand, within CSW01_04770at 994.920 kb on + strand, within CSW01_04770at 994.973 kb on + strandat 994.973 kb on - strandat 994.973 kb on - strandat 994.973 kb on - strandat 994.993 kb on - strandat 994.996 kb on - strandat 995.043 kb on - strandat 995.043 kb on - strandat 995.150 kb on + strandat 995.150 kb on + strandat 995.158 kb on - strandat 995.168 kb on + strandat 995.186 kb on + strandat 995.188 kb on + strandat 995.194 kb on - strandat 995.222 kb on - strandat 995.283 kb on + strandat 995.308 kb on + strandat 995.381 kb on - strandat 995.383 kb on + strandat 995.406 kb on - strandat 995.482 kb on + strandat 995.546 kb on - strand, within CSW01_04775at 995.553 kb on + strand, within CSW01_04775at 995.553 kb on + strand, within CSW01_04775at 995.553 kb on + strand, within CSW01_04775at 995.553 kb on + strand, within CSW01_04775at 995.561 kb on - strand, within CSW01_04775at 995.561 kb on - strand, within CSW01_04775at 995.561 kb on - strand, within CSW01_04775at 995.561 kb on - strand, within CSW01_04775at 995.587 kb on + strand, within CSW01_04775at 995.666 kb on + strand, within CSW01_04775at 995.669 kb on - strand, within CSW01_04775at 995.671 kb on + strand, within CSW01_04775at 995.697 kb on - strand, within CSW01_04775at 995.699 kb on - strand, within CSW01_04775at 995.792 kb on + strand, within CSW01_04775at 995.849 kb on + strand, within CSW01_04775at 995.856 kb on - strand, within CSW01_04775at 995.877 kb on - strand, within CSW01_04775at 995.997 kb on - strand, within CSW01_04775at 996.028 kb on + strand, within CSW01_04775at 996.028 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.033 kb on + strand, within CSW01_04775at 996.036 kb on - strand, within CSW01_04775at 996.041 kb on - strand, within CSW01_04775at 996.041 kb on - strand, within CSW01_04775at 996.058 kb on - strand, within CSW01_04775at 996.132 kb on + strand, within CSW01_04775at 996.150 kb on + strand, within CSW01_04775at 996.158 kb on - strand, within CSW01_04775at 996.291 kb on + strand, within CSW01_04775at 996.300 kb on - strand, within CSW01_04775at 996.350 kb on + strand, within CSW01_04775at 996.490 kb on + strand, within CSW01_04775at 996.523 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.545 kb on + strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.553 kb on - strand, within CSW01_04775at 996.558 kb on - strand, within CSW01_04775at 996.563 kb on - strand, within CSW01_04775at 996.570 kb on + strand, within CSW01_04775at 996.626 kb on - strandat 996.640 kb on + strandat 996.666 kb on - strandat 996.727 kb on + strandat 996.760 kb on + strandat 996.814 kb on + strandat 996.814 kb on + strandat 996.903 kb on + strandat 996.912 kb on + strandat 996.917 kb on + strandat 996.941 kb on + strandat 996.943 kb on - strandat 996.978 kb on + strand, within CSW01_04780at 997.004 kb on + strand, within CSW01_04780at 997.131 kb on + strand, within CSW01_04780at 997.164 kb on + strand, within CSW01_04780at 997.167 kb on - strand, within CSW01_04780at 997.172 kb on - strand, within CSW01_04780at 997.174 kb on - strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.255 kb on + strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.263 kb on - strand, within CSW01_04780at 997.299 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.336 kb on + strand, within CSW01_04780at 997.344 kb on - strand, within CSW01_04780at 997.359 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.361 kb on + strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.369 kb on - strand, within CSW01_04780at 997.370 kb on + strand, within CSW01_04780at 997.373 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.375 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.377 kb on + strand, within CSW01_04780at 997.378 kb on - strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.382 kb on + strand, within CSW01_04780at 997.383 kb on + strand, within CSW01_04780at 997.383 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.390 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.400 kb on - strand, within CSW01_04780at 997.401 kb on - strand, within CSW01_04780at 997.460 kb on + strandat 997.463 kb on - strandat 997.468 kb on - strandat 997.479 kb on + strandat 997.567 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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994,450 - CSW01_04770 0.72 -3.4
994,540 - CSW01_04770 0.76 -1.2
994,578 + CSW01_04770 0.77 +1.3
994,593 + CSW01_04770 0.77 -1.1
994,601 - CSW01_04770 0.78 +0.4
994,653 - CSW01_04770 0.80 -2.5
994,672 + CSW01_04770 0.80 +0.9
994,672 + CSW01_04770 0.80 +1.0
994,680 + CSW01_04770 0.80 +0.7
994,717 + CSW01_04770 0.82 +0.8
994,727 + CSW01_04770 0.82 +0.3
994,816 + CSW01_04770 0.85 -1.5
994,818 + CSW01_04770 0.85 +1.5
994,818 + CSW01_04770 0.85 -0.9
994,826 - CSW01_04770 0.86 -3.6
994,850 + CSW01_04770 0.86 +0.2
994,850 + CSW01_04770 0.86 -3.0
994,920 + CSW01_04770 0.89 -0.8
994,973 + +0.6
994,973 - -0.8
994,973 - +1.6
994,973 - -2.1
994,993 - -3.1
994,996 - -1.1
995,043 - -0.9
995,043 - +1.6
995,150 + +1.1
995,150 + -0.0
995,158 - +0.7
995,168 + +0.8
995,186 + +0.2
995,188 + +0.5
995,194 - +0.2
995,222 - +0.1
995,283 + +1.4
995,308 + +0.7
995,381 - -1.2
995,383 + +0.6
995,406 - -1.2
995,482 + -0.2
995,546 - CSW01_04775 0.11 +0.4
995,553 + CSW01_04775 0.12 +1.0
995,553 + CSW01_04775 0.12 -0.2
995,553 + CSW01_04775 0.12 +0.3
995,553 + CSW01_04775 0.12 +1.1
995,561 - CSW01_04775 0.13 +1.4
995,561 - CSW01_04775 0.13 -0.1
995,561 - CSW01_04775 0.13 -1.1
995,561 - CSW01_04775 0.13 -2.0
995,587 + CSW01_04775 0.15 -0.2
995,666 + CSW01_04775 0.21 +0.2
995,669 - CSW01_04775 0.21 -1.4
995,671 + CSW01_04775 0.21 +1.1
995,697 - CSW01_04775 0.23 -2.4
995,699 - CSW01_04775 0.23 +1.3
995,792 + CSW01_04775 0.30 -1.5
995,849 + CSW01_04775 0.34 -3.7
995,856 - CSW01_04775 0.35 +0.2
995,877 - CSW01_04775 0.37 -0.9
995,997 - CSW01_04775 0.46 -0.1
996,028 + CSW01_04775 0.48 -0.7
996,028 + CSW01_04775 0.48 -1.8
996,033 + CSW01_04775 0.48 +0.6
996,033 + CSW01_04775 0.48 +0.5
996,033 + CSW01_04775 0.48 -0.7
996,036 - CSW01_04775 0.49 +1.2
996,041 - CSW01_04775 0.49 -4.6
996,041 - CSW01_04775 0.49 +0.7
996,058 - CSW01_04775 0.50 -1.7
996,132 + CSW01_04775 0.56 +0.9
996,150 + CSW01_04775 0.57 -2.1
996,158 - CSW01_04775 0.58 +1.3
996,291 + CSW01_04775 0.68 -0.3
996,300 - CSW01_04775 0.69 +0.6
996,350 + CSW01_04775 0.73 -3.2
996,490 + CSW01_04775 0.83 -3.8
996,523 + CSW01_04775 0.86 -0.2
996,545 + CSW01_04775 0.87 +0.7
996,545 + CSW01_04775 0.87 -0.3
996,545 + CSW01_04775 0.87 +0.5
996,553 - CSW01_04775 0.88 +1.4
996,553 - CSW01_04775 0.88 +0.2
996,553 - CSW01_04775 0.88 -0.2
996,553 - CSW01_04775 0.88 -0.6
996,558 - CSW01_04775 0.88 +0.6
996,563 - CSW01_04775 0.89 +0.1
996,570 + CSW01_04775 0.89 +0.3
996,626 - +0.4
996,640 + +0.4
996,666 - +0.8
996,727 + +2.1
996,760 + -0.7
996,814 + +0.4
996,814 + -2.2
996,903 + +0.6
996,912 + -0.9
996,917 + -1.5
996,941 + -2.9
996,943 - -0.9
996,978 + CSW01_04780 0.15 -2.5
997,004 + CSW01_04780 0.19 -0.4
997,131 + CSW01_04780 0.40 -2.1
997,164 + CSW01_04780 0.46 +1.1
997,167 - CSW01_04780 0.46 +1.0
997,172 - CSW01_04780 0.47 +0.5
997,174 - CSW01_04780 0.47 +0.4
997,255 + CSW01_04780 0.61 -0.0
997,255 + CSW01_04780 0.61 +1.6
997,255 + CSW01_04780 0.61 +0.3
997,263 - CSW01_04780 0.62 +0.2
997,263 - CSW01_04780 0.62 -1.6
997,263 - CSW01_04780 0.62 +2.9
997,263 - CSW01_04780 0.62 +0.6
997,263 - CSW01_04780 0.62 +1.1
997,263 - CSW01_04780 0.62 +0.9
997,263 - CSW01_04780 0.62 -0.3
997,299 + CSW01_04780 0.68 -0.8
997,336 + CSW01_04780 0.74 -2.3
997,336 + CSW01_04780 0.74 -0.4
997,336 + CSW01_04780 0.74 -0.8
997,344 - CSW01_04780 0.75 +0.8
997,359 + CSW01_04780 0.78 +1.2
997,361 + CSW01_04780 0.78 +0.7
997,361 + CSW01_04780 0.78 +0.3
997,361 + CSW01_04780 0.78 -0.7
997,361 + CSW01_04780 0.78 +0.2
997,361 + CSW01_04780 0.78 +0.9
997,369 - CSW01_04780 0.80 +0.4
997,369 - CSW01_04780 0.80 +0.6
997,370 + CSW01_04780 0.80 +0.1
997,373 + CSW01_04780 0.80 -3.7
997,375 + CSW01_04780 0.81 -2.3
997,375 + CSW01_04780 0.81 -0.9
997,375 + CSW01_04780 0.81 -0.3
997,375 + CSW01_04780 0.81 -1.0
997,377 + CSW01_04780 0.81 -2.2
997,377 + CSW01_04780 0.81 -0.1
997,377 + CSW01_04780 0.81 +1.1
997,377 + CSW01_04780 0.81 -2.6
997,378 - CSW01_04780 0.81 +0.8
997,382 + CSW01_04780 0.82 +0.1
997,382 + CSW01_04780 0.82 -0.3
997,382 + CSW01_04780 0.82 +0.4
997,382 + CSW01_04780 0.82 +1.5
997,382 + CSW01_04780 0.82 +1.7
997,382 + CSW01_04780 0.82 +0.5
997,382 + CSW01_04780 0.82 -3.9
997,382 + CSW01_04780 0.82 -0.6
997,383 + CSW01_04780 0.82 +0.9
997,383 - CSW01_04780 0.82 -0.3
997,390 - CSW01_04780 0.83 +1.0
997,390 - CSW01_04780 0.83 +0.1
997,400 - CSW01_04780 0.85 +1.4
997,400 - CSW01_04780 0.85 -0.9
997,401 - CSW01_04780 0.85 +1.2
997,460 + +2.3
997,463 - +0.4
997,468 - +1.0
997,479 + +0.4
997,567 - -0.1

Or see this region's nucleotide sequence