Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04500

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04485 and CSW01_04490 are separated by 102 nucleotidesCSW01_04490 and CSW01_04495 are separated by 32 nucleotidesCSW01_04495 and CSW01_04500 are separated by 17 nucleotidesCSW01_04500 and CSW01_04505 are separated by 225 nucleotides CSW01_04485: CSW01_04485 - hypothetical protein, at 935,401 to 935,604 _04485 CSW01_04490: CSW01_04490 - DUF533 domain-containing protein, at 935,707 to 936,351 _04490 CSW01_04495: CSW01_04495 - hypothetical protein, at 936,384 to 936,575 _04495 CSW01_04500: CSW01_04500 - proline--tRNA ligase, at 936,593 to 938,308 _04500 CSW01_04505: CSW01_04505 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 938,534 to 939,229 _04505 Position (kb) 936 937 938 939Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 935.613 kb on + strandat 935.679 kb on + strandat 935.726 kb on + strandat 935.915 kb on - strand, within CSW01_04490at 935.944 kb on + strand, within CSW01_04490at 935.988 kb on - strand, within CSW01_04490at 936.121 kb on - strand, within CSW01_04490at 936.122 kb on + strand, within CSW01_04490at 936.296 kb on - strandat 936.317 kb on - strandat 936.329 kb on - strandat 936.374 kb on - strandat 936.545 kb on + strand, within CSW01_04495at 936.553 kb on - strand, within CSW01_04495at 936.591 kb on + strandat 938.563 kb on - strandat 938.621 kb on + strand, within CSW01_04505at 938.681 kb on + strand, within CSW01_04505at 938.689 kb on - strand, within CSW01_04505at 938.736 kb on + strand, within CSW01_04505at 938.858 kb on - strand, within CSW01_04505at 938.886 kb on - strand, within CSW01_04505at 939.037 kb on + strand, within CSW01_04505at 939.045 kb on - strand, within CSW01_04505at 939.077 kb on - strand, within CSW01_04505at 939.105 kb on + strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505at 939.115 kb on - strand, within CSW01_04505

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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935,613 + -0.1
935,679 + -0.2
935,726 + +1.1
935,915 - CSW01_04490 0.32 +0.5
935,944 + CSW01_04490 0.37 +1.5
935,988 - CSW01_04490 0.44 -2.4
936,121 - CSW01_04490 0.64 +0.7
936,122 + CSW01_04490 0.64 -0.5
936,296 - +0.3
936,317 - +1.5
936,329 - +0.5
936,374 - +1.6
936,545 + CSW01_04495 0.84 +0.4
936,553 - CSW01_04495 0.88 +0.6
936,591 + +1.9
938,563 - +0.2
938,621 + CSW01_04505 0.12 +0.4
938,681 + CSW01_04505 0.21 +0.6
938,689 - CSW01_04505 0.22 -1.0
938,736 + CSW01_04505 0.29 +1.9
938,858 - CSW01_04505 0.47 -3.8
938,886 - CSW01_04505 0.51 +0.4
939,037 + CSW01_04505 0.72 -0.9
939,045 - CSW01_04505 0.73 +2.6
939,077 - CSW01_04505 0.78 -1.6
939,105 + CSW01_04505 0.82 -2.3
939,115 - CSW01_04505 0.83 -2.5
939,115 - CSW01_04505 0.83 +0.5

Or see this region's nucleotide sequence