Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03815

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03810 and CSW01_03815 are separated by 334 nucleotidesCSW01_03815 and CSW01_03820 are separated by 221 nucleotides CSW01_03810: CSW01_03810 - copper homeostasis protein CutC, at 784,313 to 785,077 _03810 CSW01_03815: CSW01_03815 - peroxidase, at 785,412 to 786,017 _03815 CSW01_03820: CSW01_03820 - hydrogen peroxide-inducible genes activator, at 786,239 to 787,144 _03820 Position (kb) 785 786 787Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 784.453 kb on + strand, within CSW01_03810at 784.489 kb on - strand, within CSW01_03810at 784.533 kb on - strand, within CSW01_03810at 784.550 kb on - strand, within CSW01_03810at 784.566 kb on - strand, within CSW01_03810at 784.568 kb on + strand, within CSW01_03810at 784.583 kb on + strand, within CSW01_03810at 784.616 kb on + strand, within CSW01_03810at 784.624 kb on - strand, within CSW01_03810at 784.629 kb on + strand, within CSW01_03810at 784.647 kb on - strand, within CSW01_03810at 784.663 kb on + strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.671 kb on - strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.680 kb on + strand, within CSW01_03810at 784.681 kb on + strand, within CSW01_03810at 784.693 kb on + strand, within CSW01_03810at 784.701 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.725 kb on - strand, within CSW01_03810at 784.753 kb on - strand, within CSW01_03810at 784.785 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.796 kb on + strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.804 kb on - strand, within CSW01_03810at 784.809 kb on + strand, within CSW01_03810at 784.859 kb on + strand, within CSW01_03810at 784.963 kb on + strand, within CSW01_03810at 784.978 kb on + strand, within CSW01_03810at 784.996 kb on + strand, within CSW01_03810at 785.004 kb on - strandat 785.033 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.088 kb on - strandat 785.178 kb on + strandat 785.180 kb on + strandat 785.180 kb on + strandat 785.188 kb on - strandat 785.271 kb on + strandat 785.311 kb on - strandat 785.385 kb on + strandat 785.638 kb on - strand, within CSW01_03815at 785.664 kb on - strand, within CSW01_03815at 785.688 kb on - strand, within CSW01_03815at 785.755 kb on + strand, within CSW01_03815at 785.763 kb on - strand, within CSW01_03815at 785.799 kb on + strand, within CSW01_03815at 785.807 kb on + strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.815 kb on - strand, within CSW01_03815at 785.866 kb on - strand, within CSW01_03815at 786.025 kb on + strandat 786.044 kb on + strandat 786.165 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.175 kb on + strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.183 kb on - strandat 786.199 kb on - strandat 786.255 kb on + strandat 786.263 kb on - strandat 786.500 kb on + strand, within CSW01_03820at 786.528 kb on - strand, within CSW01_03820at 786.604 kb on + strand, within CSW01_03820at 786.614 kb on + strand, within CSW01_03820at 786.663 kb on - strand, within CSW01_03820at 786.670 kb on - strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.672 kb on + strand, within CSW01_03820at 786.674 kb on + strand, within CSW01_03820at 786.675 kb on - strand, within CSW01_03820at 786.680 kb on - strand, within CSW01_03820at 786.682 kb on - strand, within CSW01_03820at 786.692 kb on + strand, within CSW01_03820at 786.704 kb on + strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.730 kb on - strand, within CSW01_03820at 786.807 kb on + strand, within CSW01_03820at 786.815 kb on - strand, within CSW01_03820at 786.820 kb on - strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.853 kb on + strand, within CSW01_03820at 786.855 kb on + strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.863 kb on - strand, within CSW01_03820at 786.920 kb on - strand, within CSW01_03820at 786.929 kb on + strand, within CSW01_03820at 786.944 kb on - strand, within CSW01_03820

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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784,453 + CSW01_03810 0.18 +0.5
784,489 - CSW01_03810 0.23 -0.9
784,533 - CSW01_03810 0.29 -2.7
784,550 - CSW01_03810 0.31 -1.4
784,566 - CSW01_03810 0.33 -4.0
784,568 + CSW01_03810 0.33 +1.3
784,583 + CSW01_03810 0.35 +0.5
784,616 + CSW01_03810 0.40 +1.7
784,624 - CSW01_03810 0.41 +2.0
784,629 + CSW01_03810 0.41 -0.7
784,647 - CSW01_03810 0.44 -0.8
784,663 + CSW01_03810 0.46 -3.2
784,671 - CSW01_03810 0.47 +0.4
784,671 - CSW01_03810 0.47 +1.9
784,680 + CSW01_03810 0.48 -2.0
784,680 + CSW01_03810 0.48 -1.0
784,681 + CSW01_03810 0.48 -3.1
784,693 + CSW01_03810 0.50 +0.3
784,701 - CSW01_03810 0.51 +0.8
784,725 - CSW01_03810 0.54 -0.1
784,725 - CSW01_03810 0.54 +0.8
784,725 - CSW01_03810 0.54 +1.4
784,725 - CSW01_03810 0.54 +0.1
784,753 - CSW01_03810 0.58 +1.1
784,785 + CSW01_03810 0.62 +1.5
784,796 + CSW01_03810 0.63 -2.7
784,796 + CSW01_03810 0.63 -1.7
784,796 + CSW01_03810 0.63 +0.9
784,796 + CSW01_03810 0.63 +0.1
784,804 - CSW01_03810 0.64 -0.7
784,804 - CSW01_03810 0.64 +1.2
784,804 - CSW01_03810 0.64 +0.7
784,804 - CSW01_03810 0.64 +0.2
784,804 - CSW01_03810 0.64 -3.7
784,809 + CSW01_03810 0.65 -3.8
784,859 + CSW01_03810 0.71 +0.3
784,963 + CSW01_03810 0.85 -0.6
784,978 + CSW01_03810 0.87 +2.3
784,996 + CSW01_03810 0.89 -0.0
785,004 - -2.3
785,033 - -0.4
785,088 - +1.0
785,088 - +0.7
785,088 - -1.3
785,088 - -1.5
785,178 + -3.6
785,180 + +1.0
785,180 + +1.1
785,188 - +0.5
785,271 + -1.0
785,311 - -2.2
785,385 + -1.0
785,638 - CSW01_03815 0.37 +2.4
785,664 - CSW01_03815 0.42 +1.6
785,688 - CSW01_03815 0.46 +2.5
785,755 + CSW01_03815 0.57 +1.6
785,763 - CSW01_03815 0.58 +2.4
785,799 + CSW01_03815 0.64 +1.2
785,807 + CSW01_03815 0.65 +3.2
785,815 - CSW01_03815 0.67 +3.8
785,815 - CSW01_03815 0.67 +3.0
785,815 - CSW01_03815 0.67 +3.1
785,866 - CSW01_03815 0.75 +2.5
786,025 + +1.2
786,044 + +2.2
786,165 + -0.0
786,175 + -3.4
786,175 + -1.9
786,175 + +2.2
786,175 + -4.7
786,175 + +0.4
786,175 + +1.0
786,175 + +1.1
786,175 + +0.6
786,175 + +0.3
786,175 + +0.4
786,175 + -1.3
786,175 + +0.3
786,175 + +0.7
786,175 + +0.3
786,175 + +0.2
786,175 + -1.5
786,183 - +0.4
786,183 - -1.8
786,183 - -0.8
786,183 - -0.3
786,183 - +0.7
786,183 - +0.9
786,183 - +0.2
786,183 - +0.0
786,183 - +0.9
786,199 - -1.1
786,255 + +0.5
786,263 - -0.1
786,500 + CSW01_03820 0.29 +2.1
786,528 - CSW01_03820 0.32 -3.1
786,604 + CSW01_03820 0.40 +0.2
786,614 + CSW01_03820 0.41 +1.1
786,663 - CSW01_03820 0.47 +1.2
786,670 - CSW01_03820 0.48 +0.9
786,672 + CSW01_03820 0.48 +1.3
786,672 + CSW01_03820 0.48 +1.8
786,672 + CSW01_03820 0.48 +1.9
786,672 + CSW01_03820 0.48 -2.3
786,674 + CSW01_03820 0.48 -1.9
786,675 - CSW01_03820 0.48 +2.4
786,680 - CSW01_03820 0.49 -0.5
786,682 - CSW01_03820 0.49 -1.3
786,692 + CSW01_03820 0.50 +1.4
786,704 + CSW01_03820 0.51 +1.9
786,730 - CSW01_03820 0.54 -0.6
786,730 - CSW01_03820 0.54 +0.9
786,807 + CSW01_03820 0.63 -1.9
786,815 - CSW01_03820 0.64 -0.2
786,820 - CSW01_03820 0.64 -2.3
786,853 + CSW01_03820 0.68 +0.5
786,853 + CSW01_03820 0.68 +0.7
786,853 + CSW01_03820 0.68 -2.1
786,855 + CSW01_03820 0.68 -2.0
786,863 - CSW01_03820 0.69 +5.4
786,863 - CSW01_03820 0.69 -2.3
786,920 - CSW01_03820 0.75 +0.5
786,929 + CSW01_03820 0.76 +3.9
786,944 - CSW01_03820 0.78 -0.5

Or see this region's nucleotide sequence