Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03325 and CSW01_03330 are separated by 527 nucleotides CSW01_03330 and CSW01_03335 are separated by 76 nucleotides CSW01_03335 and CSW01_03340 are separated by 119 nucleotides
CSW01_03325: CSW01_03325 - porin, at 673,572 to 674,624
_03325
CSW01_03330: CSW01_03330 - transcription elongation factor GreA, at 675,152 to 675,625
_03330
CSW01_03335: CSW01_03335 - ribosome assembly RNA-binding protein YhbY, at 675,702 to 675,998
_03335
CSW01_03340: CSW01_03340 - ribosomal RNA large subunit methyltransferase E, at 676,118 to 676,747
_03340
Position (kb) 675
676 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 674.164 kb on + strand, within CSW01_03325 at 674.182 kb on - strand, within CSW01_03325 at 674.198 kb on - strand, within CSW01_03325 at 674.391 kb on + strand, within CSW01_03325 at 674.399 kb on - strand, within CSW01_03325 at 674.595 kb on - strand at 674.728 kb on - strand at 675.071 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.076 kb on + strand at 675.079 kb on - strand at 675.079 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.084 kb on - strand at 675.144 kb on + strand at 675.144 kb on + strand at 675.208 kb on - strand, within CSW01_03330 at 675.324 kb on - strand, within CSW01_03330 at 675.324 kb on - strand, within CSW01_03330 at 675.367 kb on + strand, within CSW01_03330 at 675.367 kb on + strand, within CSW01_03330 at 675.451 kb on + strand, within CSW01_03330 at 675.586 kb on - strand at 675.618 kb on + strand at 675.626 kb on - strand at 675.626 kb on - strand at 675.626 kb on - strand at 675.726 kb on + strand at 675.904 kb on + strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.935 kb on - strand, within CSW01_03335 at 675.953 kb on + strand, within CSW01_03335 at 676.085 kb on + strand at 676.090 kb on + strand at 676.126 kb on + strand at 676.155 kb on + strand at 676.163 kb on - strand at 676.198 kb on + strand, within CSW01_03340 at 676.346 kb on + strand, within CSW01_03340 at 676.427 kb on + strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.440 kb on - strand, within CSW01_03340 at 676.561 kb on + strand, within CSW01_03340
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 674,164 + CSW01_03325 0.56 -3.5 674,182 - CSW01_03325 0.58 -2.7 674,198 - CSW01_03325 0.59 +0.4 674,391 + CSW01_03325 0.78 +1.6 674,399 - CSW01_03325 0.79 +0.2 674,595 - -0.8 674,728 - -1.7 675,071 + -2.1 675,076 + -4.1 675,076 + +1.1 675,076 + -0.7 675,076 + +0.2 675,079 - -3.5 675,079 - +0.2 675,084 - -2.9 675,084 - +0.0 675,084 - -0.8 675,084 - +1.1 675,084 - +0.7 675,144 + -1.4 675,144 + +0.2 675,208 - CSW01_03330 0.12 -1.0 675,324 - CSW01_03330 0.36 +1.0 675,324 - CSW01_03330 0.36 -0.1 675,367 + CSW01_03330 0.45 +1.2 675,367 + CSW01_03330 0.45 +1.2 675,451 + CSW01_03330 0.63 +2.3 675,586 - -3.3 675,618 + -0.5 675,626 - +0.4 675,626 - +0.8 675,626 - +0.2 675,726 + +1.1 675,904 + CSW01_03335 0.68 +0.2 675,935 - CSW01_03335 0.78 -1.7 675,935 - CSW01_03335 0.78 -0.7 675,935 - CSW01_03335 0.78 -3.6 675,953 + CSW01_03335 0.85 -3.1 676,085 + -0.5 676,090 + +0.9 676,126 + +0.9 676,155 + -0.4 676,163 - +1.1 676,198 + CSW01_03340 0.13 -1.7 676,346 + CSW01_03340 0.36 -1.8 676,427 + CSW01_03340 0.49 -0.0 676,440 - CSW01_03340 0.51 -0.6 676,440 - CSW01_03340 0.51 -2.3 676,440 - CSW01_03340 0.51 +1.2 676,561 + CSW01_03340 0.70 -0.8
Or see this region's nucleotide sequence