Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03325

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03320 and CSW01_03325 are separated by 79 nucleotidesCSW01_03325 and CSW01_03330 are separated by 527 nucleotides CSW01_03320: CSW01_03320 - serine-type D-Ala-D-Ala carboxypeptidase, at 672,029 to 673,492 _03320 CSW01_03325: CSW01_03325 - porin, at 673,572 to 674,624 _03325 CSW01_03330: CSW01_03330 - transcription elongation factor GreA, at 675,152 to 675,625 _03330 Position (kb) 673 674 675Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 672.583 kb on - strand, within CSW01_03320at 672.689 kb on - strand, within CSW01_03320at 672.695 kb on - strand, within CSW01_03320at 672.748 kb on - strand, within CSW01_03320at 672.767 kb on + strand, within CSW01_03320at 672.829 kb on + strand, within CSW01_03320at 672.829 kb on + strand, within CSW01_03320at 672.837 kb on - strand, within CSW01_03320at 672.837 kb on - strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.865 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.900 kb on + strand, within CSW01_03320at 672.902 kb on + strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 672.908 kb on - strand, within CSW01_03320at 673.010 kb on - strand, within CSW01_03320at 673.065 kb on + strand, within CSW01_03320at 673.068 kb on - strand, within CSW01_03320at 673.119 kb on + strand, within CSW01_03320at 673.132 kb on - strand, within CSW01_03320at 673.153 kb on + strand, within CSW01_03320at 673.153 kb on + strand, within CSW01_03320at 673.153 kb on + strand, within CSW01_03320at 673.153 kb on + strand, within CSW01_03320at 673.156 kb on - strand, within CSW01_03320at 673.156 kb on - strand, within CSW01_03320at 673.207 kb on - strand, within CSW01_03320at 673.272 kb on + strand, within CSW01_03320at 673.314 kb on - strand, within CSW01_03320at 673.380 kb on - strandat 673.566 kb on - strandat 673.663 kb on - strandat 673.777 kb on - strand, within CSW01_03325at 673.911 kb on + strand, within CSW01_03325at 673.919 kb on - strand, within CSW01_03325at 673.919 kb on - strand, within CSW01_03325at 673.926 kb on + strand, within CSW01_03325at 674.032 kb on + strand, within CSW01_03325at 674.061 kb on - strand, within CSW01_03325at 674.061 kb on - strand, within CSW01_03325at 674.164 kb on + strand, within CSW01_03325at 674.182 kb on - strand, within CSW01_03325at 674.198 kb on - strand, within CSW01_03325at 674.391 kb on + strand, within CSW01_03325at 674.399 kb on - strand, within CSW01_03325at 674.595 kb on - strandat 674.728 kb on - strandat 675.071 kb on + strandat 675.076 kb on + strandat 675.076 kb on + strandat 675.076 kb on + strandat 675.076 kb on + strandat 675.079 kb on - strandat 675.079 kb on - strandat 675.084 kb on - strandat 675.084 kb on - strandat 675.084 kb on - strandat 675.084 kb on - strandat 675.084 kb on - strandat 675.144 kb on + strandat 675.144 kb on + strandat 675.208 kb on - strand, within CSW01_03330at 675.324 kb on - strand, within CSW01_03330at 675.324 kb on - strand, within CSW01_03330at 675.367 kb on + strand, within CSW01_03330at 675.367 kb on + strand, within CSW01_03330at 675.451 kb on + strand, within CSW01_03330at 675.586 kb on - strandat 675.618 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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672,583 - CSW01_03320 0.38 +1.4
672,689 - CSW01_03320 0.45 -0.4
672,695 - CSW01_03320 0.45 +0.4
672,748 - CSW01_03320 0.49 +2.2
672,767 + CSW01_03320 0.50 -0.9
672,829 + CSW01_03320 0.55 -1.2
672,829 + CSW01_03320 0.55 +0.7
672,837 - CSW01_03320 0.55 +0.9
672,837 - CSW01_03320 0.55 +0.7
672,865 + CSW01_03320 0.57 -3.1
672,865 + CSW01_03320 0.57 -0.6
672,865 + CSW01_03320 0.57 +0.2
672,865 + CSW01_03320 0.57 +1.0
672,900 + CSW01_03320 0.59 +1.4
672,900 + CSW01_03320 0.59 +0.7
672,900 + CSW01_03320 0.59 -1.0
672,900 + CSW01_03320 0.59 -2.0
672,900 + CSW01_03320 0.59 -3.2
672,900 + CSW01_03320 0.59 -3.8
672,900 + CSW01_03320 0.59 -1.2
672,902 + CSW01_03320 0.60 +0.4
672,908 - CSW01_03320 0.60 -0.1
672,908 - CSW01_03320 0.60 +0.5
672,908 - CSW01_03320 0.60 +3.9
672,908 - CSW01_03320 0.60 +0.2
672,908 - CSW01_03320 0.60 -1.1
672,908 - CSW01_03320 0.60 -2.3
672,908 - CSW01_03320 0.60 +1.1
672,908 - CSW01_03320 0.60 -0.6
673,010 - CSW01_03320 0.67 -3.6
673,065 + CSW01_03320 0.71 -1.2
673,068 - CSW01_03320 0.71 -2.4
673,119 + CSW01_03320 0.74 -0.0
673,132 - CSW01_03320 0.75 +1.6
673,153 + CSW01_03320 0.77 +0.6
673,153 + CSW01_03320 0.77 -2.0
673,153 + CSW01_03320 0.77 +1.1
673,153 + CSW01_03320 0.77 -0.1
673,156 - CSW01_03320 0.77 -0.8
673,156 - CSW01_03320 0.77 +0.4
673,207 - CSW01_03320 0.80 +1.3
673,272 + CSW01_03320 0.85 +0.3
673,314 - CSW01_03320 0.88 -4.7
673,380 - -0.1
673,566 - +0.6
673,663 - -1.8
673,777 - CSW01_03325 0.19 -0.2
673,911 + CSW01_03325 0.32 -1.6
673,919 - CSW01_03325 0.33 -0.2
673,919 - CSW01_03325 0.33 -1.7
673,926 + CSW01_03325 0.34 -2.5
674,032 + CSW01_03325 0.44 -2.0
674,061 - CSW01_03325 0.46 -1.4
674,061 - CSW01_03325 0.46 -1.2
674,164 + CSW01_03325 0.56 -3.5
674,182 - CSW01_03325 0.58 -2.7
674,198 - CSW01_03325 0.59 +0.4
674,391 + CSW01_03325 0.78 +1.6
674,399 - CSW01_03325 0.79 +0.2
674,595 - -0.8
674,728 - -1.7
675,071 + -2.1
675,076 + -4.1
675,076 + +1.1
675,076 + -0.7
675,076 + +0.2
675,079 - -3.5
675,079 - +0.2
675,084 - -2.9
675,084 - +0.0
675,084 - -0.8
675,084 - +1.1
675,084 - +0.7
675,144 + -1.4
675,144 + +0.2
675,208 - CSW01_03330 0.12 -1.0
675,324 - CSW01_03330 0.36 +1.0
675,324 - CSW01_03330 0.36 -0.1
675,367 + CSW01_03330 0.45 +1.2
675,367 + CSW01_03330 0.45 +1.2
675,451 + CSW01_03330 0.63 +2.3
675,586 - -3.3
675,618 + -0.5

Or see this region's nucleotide sequence