Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03275

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03265 and CSW01_03270 are separated by 572 nucleotidesCSW01_03270 and CSW01_03275 overlap by 52 nucleotidesCSW01_03275 and CSW01_03280 are separated by 207 nucleotides CSW01_03265: CSW01_03265 - peptide ABC transporter substrate-binding protein, at 654,397 to 656,067 _03265 CSW01_03270: CSW01_03270 - hypothetical protein, at 656,640 to 657,029 _03270 CSW01_03275: CSW01_03275 - hybrid sensor histidine kinase/response regulator, at 656,978 to 660,367 _03275 CSW01_03280: CSW01_03280 - 16S rRNA methyltransferase, at 660,575 to 661,597 _03280 Position (kb) 656 657 658 659 660 661Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 656.001 kb on - strandat 656.043 kb on - strandat 656.055 kb on - strandat 656.132 kb on + strandat 656.140 kb on - strandat 656.160 kb on - strandat 656.160 kb on - strandat 656.162 kb on + strandat 656.162 kb on + strandat 656.170 kb on - strandat 656.195 kb on + strandat 656.642 kb on + strandat 656.648 kb on + strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.656 kb on - strandat 656.685 kb on + strand, within CSW01_03270at 656.693 kb on - strand, within CSW01_03270at 656.733 kb on - strand, within CSW01_03270at 656.742 kb on + strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.890 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.902 kb on - strand, within CSW01_03270at 656.980 kb on + strandat 656.987 kb on + strandat 657.066 kb on - strandat 657.075 kb on + strandat 657.080 kb on + strandat 657.088 kb on - strandat 657.103 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.105 kb on + strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.113 kb on - strandat 657.142 kb on + strandat 657.142 kb on + strandat 657.150 kb on - strandat 657.190 kb on - strandat 657.228 kb on - strandat 657.232 kb on + strandat 657.242 kb on + strandat 657.249 kb on + strandat 657.254 kb on + strandat 657.254 kb on + strandat 657.254 kb on + strandat 657.261 kb on + strandat 657.262 kb on - strandat 657.322 kb on - strand, within CSW01_03275at 657.389 kb on + strand, within CSW01_03275at 657.393 kb on + strand, within CSW01_03275at 657.404 kb on + strand, within CSW01_03275at 657.425 kb on - strand, within CSW01_03275at 657.441 kb on + strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.449 kb on - strand, within CSW01_03275at 657.484 kb on + strand, within CSW01_03275at 657.484 kb on + strand, within CSW01_03275at 657.492 kb on - strand, within CSW01_03275at 657.519 kb on - strand, within CSW01_03275at 657.564 kb on + strand, within CSW01_03275at 657.566 kb on + strand, within CSW01_03275at 657.574 kb on - strand, within CSW01_03275at 657.602 kb on + strand, within CSW01_03275at 657.632 kb on - strand, within CSW01_03275at 657.632 kb on - strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.634 kb on + strand, within CSW01_03275at 657.639 kb on + strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.642 kb on - strand, within CSW01_03275at 657.647 kb on - strand, within CSW01_03275at 657.650 kb on + strand, within CSW01_03275at 657.695 kb on - strand, within CSW01_03275at 657.832 kb on + strand, within CSW01_03275at 657.832 kb on + strand, within CSW01_03275at 657.846 kb on + strand, within CSW01_03275at 657.871 kb on + strand, within CSW01_03275at 657.881 kb on - strand, within CSW01_03275at 657.895 kb on + strand, within CSW01_03275at 657.900 kb on + strand, within CSW01_03275at 657.929 kb on - strand, within CSW01_03275at 657.961 kb on - strand, within CSW01_03275at 657.972 kb on + strand, within CSW01_03275at 657.980 kb on - strand, within CSW01_03275at 657.982 kb on + strand, within CSW01_03275at 657.982 kb on + strand, within CSW01_03275at 657.991 kb on + strand, within CSW01_03275at 657.999 kb on - strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.021 kb on + strand, within CSW01_03275at 658.029 kb on - strand, within CSW01_03275at 658.029 kb on - strand, within CSW01_03275at 658.127 kb on - strand, within CSW01_03275at 658.134 kb on + strand, within CSW01_03275at 658.142 kb on - strand, within CSW01_03275at 658.154 kb on + strand, within CSW01_03275at 658.229 kb on + strand, within CSW01_03275at 658.243 kb on + strand, within CSW01_03275at 658.251 kb on - strand, within CSW01_03275at 658.337 kb on + strand, within CSW01_03275at 658.337 kb on + strand, within CSW01_03275at 658.345 kb on - strand, within CSW01_03275at 658.345 kb on - strand, within CSW01_03275at 658.402 kb on + strand, within CSW01_03275at 658.410 kb on - strand, within CSW01_03275at 658.420 kb on + strand, within CSW01_03275at 658.426 kb on + strand, within CSW01_03275at 658.485 kb on - strand, within CSW01_03275at 658.511 kb on + strand, within CSW01_03275at 658.511 kb on + strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.519 kb on - strand, within CSW01_03275at 658.595 kb on - strand, within CSW01_03275at 658.619 kb on + strand, within CSW01_03275at 658.619 kb on + strand, within CSW01_03275at 658.846 kb on - strand, within CSW01_03275at 658.851 kb on - strand, within CSW01_03275at 658.851 kb on - strand, within CSW01_03275at 658.918 kb on - strand, within CSW01_03275at 658.929 kb on - strand, within CSW01_03275at 658.942 kb on + strand, within CSW01_03275at 659.006 kb on + strand, within CSW01_03275at 659.118 kb on - strand, within CSW01_03275at 659.154 kb on + strand, within CSW01_03275at 659.253 kb on - strand, within CSW01_03275at 659.270 kb on + strand, within CSW01_03275at 659.285 kb on - strand, within CSW01_03275at 659.396 kb on + strand, within CSW01_03275at 659.459 kb on + strand, within CSW01_03275at 659.545 kb on - strand, within CSW01_03275at 659.560 kb on - strand, within CSW01_03275at 659.584 kb on + strand, within CSW01_03275at 659.617 kb on - strand, within CSW01_03275at 659.702 kb on + strand, within CSW01_03275at 659.730 kb on + strand, within CSW01_03275at 659.738 kb on - strand, within CSW01_03275at 659.763 kb on - strand, within CSW01_03275at 659.772 kb on + strand, within CSW01_03275at 659.777 kb on + strand, within CSW01_03275at 659.865 kb on + strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.916 kb on - strand, within CSW01_03275at 659.932 kb on - strand, within CSW01_03275at 659.949 kb on - strand, within CSW01_03275at 659.981 kb on + strand, within CSW01_03275at 660.060 kb on - strandat 660.074 kb on - strandat 660.119 kb on + strandat 660.119 kb on + strandat 660.163 kb on - strandat 660.222 kb on + strandat 660.230 kb on - strandat 660.238 kb on + strandat 660.357 kb on + strandat 660.712 kb on + strand, within CSW01_03280at 660.790 kb on + strand, within CSW01_03280at 660.842 kb on - strand, within CSW01_03280at 660.897 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.953 kb on + strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 660.961 kb on - strand, within CSW01_03280at 661.011 kb on + strand, within CSW01_03280at 661.012 kb on - strand, within CSW01_03280at 661.249 kb on - strand, within CSW01_03280at 661.254 kb on - strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.287 kb on + strand, within CSW01_03280at 661.358 kb on + strand, within CSW01_03280

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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656,001 - -0.9
656,043 - +1.1
656,055 - -1.5
656,132 + +0.8
656,140 - +0.1
656,160 - +1.0
656,160 - -3.4
656,162 + +0.1
656,162 + +0.0
656,170 - +1.6
656,195 + +0.8
656,642 + -0.6
656,648 + +0.1
656,656 - -1.1
656,656 - -0.3
656,656 - +0.9
656,685 + CSW01_03270 0.12 -1.1
656,693 - CSW01_03270 0.14 +2.5
656,733 - CSW01_03270 0.24 -0.1
656,742 + CSW01_03270 0.26 +0.5
656,890 - CSW01_03270 0.64 +0.1
656,890 - CSW01_03270 0.64 -0.5
656,902 - CSW01_03270 0.67 +0.9
656,902 - CSW01_03270 0.67 +1.8
656,980 + -0.2
656,987 + -0.3
657,066 - -3.7
657,075 + +0.3
657,080 + +0.8
657,088 - -2.5
657,103 + -0.1
657,105 + +0.7
657,105 + +0.6
657,105 + -1.8
657,105 + -2.1
657,105 + +0.9
657,105 + +0.5
657,105 + -1.0
657,105 + -0.8
657,105 + +0.5
657,113 - +0.9
657,113 - -0.5
657,113 - +0.9
657,113 - -1.9
657,113 - -0.5
657,113 - +1.1
657,113 - -2.1
657,113 - +0.8
657,113 - +0.1
657,113 - -2.4
657,113 - +0.2
657,113 - +1.0
657,113 - +1.3
657,142 + -2.3
657,142 + -1.3
657,150 - +1.2
657,190 - +0.6
657,228 - +0.1
657,232 + +0.9
657,242 + +0.3
657,249 + +0.7
657,254 + -0.0
657,254 + -0.0
657,254 + +1.4
657,261 + +1.1
657,262 - -0.1
657,322 - CSW01_03275 0.10 +0.5
657,389 + CSW01_03275 0.12 -0.1
657,393 + CSW01_03275 0.12 +0.8
657,404 + CSW01_03275 0.13 +0.8
657,425 - CSW01_03275 0.13 -3.2
657,441 + CSW01_03275 0.14 -1.4
657,449 - CSW01_03275 0.14 +0.7
657,449 - CSW01_03275 0.14 +1.0
657,449 - CSW01_03275 0.14 +0.6
657,484 + CSW01_03275 0.15 +1.2
657,484 + CSW01_03275 0.15 +0.2
657,492 - CSW01_03275 0.15 -2.1
657,519 - CSW01_03275 0.16 +1.3
657,564 + CSW01_03275 0.17 +0.9
657,566 + CSW01_03275 0.17 -3.3
657,574 - CSW01_03275 0.18 -1.7
657,602 + CSW01_03275 0.18 +1.4
657,632 - CSW01_03275 0.19 +0.7
657,632 - CSW01_03275 0.19 +0.4
657,634 + CSW01_03275 0.19 -2.6
657,634 + CSW01_03275 0.19 +1.8
657,634 + CSW01_03275 0.19 -2.8
657,634 + CSW01_03275 0.19 +2.0
657,634 + CSW01_03275 0.19 +1.3
657,634 + CSW01_03275 0.19 +2.1
657,634 + CSW01_03275 0.19 +1.0
657,639 + CSW01_03275 0.19 -4.3
657,642 - CSW01_03275 0.20 +1.3
657,642 - CSW01_03275 0.20 -3.9
657,642 - CSW01_03275 0.20 +1.3
657,642 - CSW01_03275 0.20 +0.8
657,642 - CSW01_03275 0.20 -2.7
657,642 - CSW01_03275 0.20 +0.8
657,642 - CSW01_03275 0.20 -2.2
657,642 - CSW01_03275 0.20 +1.4
657,642 - CSW01_03275 0.20 +0.1
657,642 - CSW01_03275 0.20 -2.8
657,642 - CSW01_03275 0.20 +0.5
657,642 - CSW01_03275 0.20 -0.8
657,642 - CSW01_03275 0.20 +0.2
657,642 - CSW01_03275 0.20 -0.5
657,642 - CSW01_03275 0.20 -2.0
657,642 - CSW01_03275 0.20 +0.5
657,642 - CSW01_03275 0.20 -0.8
657,642 - CSW01_03275 0.20 +0.8
657,647 - CSW01_03275 0.20 +0.9
657,650 + CSW01_03275 0.20 +0.4
657,695 - CSW01_03275 0.21 -0.6
657,832 + CSW01_03275 0.25 -0.6
657,832 + CSW01_03275 0.25 -2.9
657,846 + CSW01_03275 0.26 -3.2
657,871 + CSW01_03275 0.26 +0.8
657,881 - CSW01_03275 0.27 +1.0
657,895 + CSW01_03275 0.27 -0.6
657,900 + CSW01_03275 0.27 +0.9
657,929 - CSW01_03275 0.28 -0.8
657,961 - CSW01_03275 0.29 -0.1
657,972 + CSW01_03275 0.29 -0.3
657,980 - CSW01_03275 0.30 -2.3
657,982 + CSW01_03275 0.30 +0.5
657,982 + CSW01_03275 0.30 -1.3
657,991 + CSW01_03275 0.30 -2.2
657,999 - CSW01_03275 0.30 -1.6
658,021 + CSW01_03275 0.31 -0.4
658,021 + CSW01_03275 0.31 -2.6
658,021 + CSW01_03275 0.31 +0.8
658,029 - CSW01_03275 0.31 -0.0
658,029 - CSW01_03275 0.31 +1.1
658,127 - CSW01_03275 0.34 +1.6
658,134 + CSW01_03275 0.34 +0.7
658,142 - CSW01_03275 0.34 +0.6
658,154 + CSW01_03275 0.35 -1.2
658,229 + CSW01_03275 0.37 +0.6
658,243 + CSW01_03275 0.37 +0.5
658,251 - CSW01_03275 0.38 +0.5
658,337 + CSW01_03275 0.40 +0.9
658,337 + CSW01_03275 0.40 +0.1
658,345 - CSW01_03275 0.40 -0.4
658,345 - CSW01_03275 0.40 -1.8
658,402 + CSW01_03275 0.42 +0.1
658,410 - CSW01_03275 0.42 +1.4
658,420 + CSW01_03275 0.43 -0.5
658,426 + CSW01_03275 0.43 +0.3
658,485 - CSW01_03275 0.44 -2.8
658,511 + CSW01_03275 0.45 +0.8
658,511 + CSW01_03275 0.45 -3.4
658,519 - CSW01_03275 0.45 -0.6
658,519 - CSW01_03275 0.45 -1.2
658,519 - CSW01_03275 0.45 -3.1
658,519 - CSW01_03275 0.45 +0.9
658,519 - CSW01_03275 0.45 +1.8
658,519 - CSW01_03275 0.45 +0.5
658,519 - CSW01_03275 0.45 +0.8
658,519 - CSW01_03275 0.45 -1.0
658,519 - CSW01_03275 0.45 -2.1
658,595 - CSW01_03275 0.48 +0.7
658,619 + CSW01_03275 0.48 -1.2
658,619 + CSW01_03275 0.48 +0.3
658,846 - CSW01_03275 0.55 -0.2
658,851 - CSW01_03275 0.55 +1.4
658,851 - CSW01_03275 0.55 +0.3
658,918 - CSW01_03275 0.57 -0.6
658,929 - CSW01_03275 0.58 -1.7
658,942 + CSW01_03275 0.58 -0.4
659,006 + CSW01_03275 0.60 -1.7
659,118 - CSW01_03275 0.63 -1.6
659,154 + CSW01_03275 0.64 +1.0
659,253 - CSW01_03275 0.67 +1.2
659,270 + CSW01_03275 0.68 +0.7
659,285 - CSW01_03275 0.68 +0.7
659,396 + CSW01_03275 0.71 +0.8
659,459 + CSW01_03275 0.73 +0.3
659,545 - CSW01_03275 0.76 -1.7
659,560 - CSW01_03275 0.76 -3.6
659,584 + CSW01_03275 0.77 +1.7
659,617 - CSW01_03275 0.78 +1.6
659,702 + CSW01_03275 0.80 -0.2
659,730 + CSW01_03275 0.81 +0.2
659,738 - CSW01_03275 0.81 -1.0
659,763 - CSW01_03275 0.82 -0.6
659,772 + CSW01_03275 0.82 +1.1
659,777 + CSW01_03275 0.83 +0.7
659,865 + CSW01_03275 0.85 +1.0
659,916 - CSW01_03275 0.87 +1.1
659,916 - CSW01_03275 0.87 +0.8
659,932 - CSW01_03275 0.87 +1.1
659,949 - CSW01_03275 0.88 +0.6
659,981 + CSW01_03275 0.89 +1.7
660,060 - +1.3
660,074 - -2.2
660,119 + -0.3
660,119 + +0.5
660,163 - +0.1
660,222 + -1.2
660,230 - -0.7
660,238 + -1.2
660,357 + -2.1
660,712 + CSW01_03280 0.13 +1.2
660,790 + CSW01_03280 0.21 -1.4
660,842 - CSW01_03280 0.26 -3.0
660,897 + CSW01_03280 0.31 -3.7
660,953 + CSW01_03280 0.37 +2.0
660,953 + CSW01_03280 0.37 +0.2
660,961 - CSW01_03280 0.38 +0.6
660,961 - CSW01_03280 0.38 -2.8
660,961 - CSW01_03280 0.38 +0.1
660,961 - CSW01_03280 0.38 +0.5
661,011 + CSW01_03280 0.43 -2.3
661,012 - CSW01_03280 0.43 -1.9
661,249 - CSW01_03280 0.66 +0.5
661,254 - CSW01_03280 0.66 +0.8
661,287 + CSW01_03280 0.70 -1.7
661,287 + CSW01_03280 0.70 +1.0
661,358 + CSW01_03280 0.77 +2.1

Or see this region's nucleotide sequence