Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03135 and CSW01_03140 are separated by 2 nucleotides CSW01_03140 and CSW01_03145 overlap by 4 nucleotides CSW01_03145 and CSW01_03150 are separated by 90 nucleotides
CSW01_03135: CSW01_03135 - 3-methyl-2-oxobutanoate hydroxymethyltransferase, at 618,317 to 619,111
_03135
CSW01_03140: CSW01_03140 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 619,114 to 619,617
_03140
CSW01_03145: CSW01_03145 - polynucleotide adenylyltransferase PcnB, at 619,614 to 620,987
_03145
CSW01_03150: CSW01_03150 - tRNA glutamyl-Q(34) synthetase GluQRS, at 621,078 to 621,968
_03150
Position (kb) 619
620
621 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 619.148 kb on - strand at 619.830 kb on - strand, within CSW01_03145 at 619.918 kb on - strand, within CSW01_03145 at 619.918 kb on - strand, within CSW01_03145 at 619.950 kb on - strand, within CSW01_03145 at 620.688 kb on - strand, within CSW01_03145 at 620.688 kb on - strand, within CSW01_03145 at 620.688 kb on - strand, within CSW01_03145 at 620.780 kb on - strand, within CSW01_03145 at 621.022 kb on + strand at 621.030 kb on - strand at 621.203 kb on + strand, within CSW01_03150 at 621.211 kb on - strand, within CSW01_03150 at 621.237 kb on + strand, within CSW01_03150 at 621.257 kb on + strand, within CSW01_03150 at 621.336 kb on + strand, within CSW01_03150 at 621.355 kb on + strand, within CSW01_03150 at 621.395 kb on + strand, within CSW01_03150 at 621.436 kb on - strand, within CSW01_03150 at 621.436 kb on - strand, within CSW01_03150 at 621.518 kb on - strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.684 kb on + strand, within CSW01_03150 at 621.685 kb on + strand, within CSW01_03150 at 621.692 kb on - strand, within CSW01_03150 at 621.692 kb on - strand, within CSW01_03150 at 621.694 kb on + strand, within CSW01_03150 at 621.694 kb on + strand, within CSW01_03150 at 621.694 kb on + strand, within CSW01_03150 at 621.694 kb on + strand, within CSW01_03150 at 621.765 kb on - strand, within CSW01_03150 at 621.790 kb on - strand, within CSW01_03150 at 621.801 kb on + strand, within CSW01_03150 at 621.819 kb on - strand, within CSW01_03150 at 621.842 kb on + strand, within CSW01_03150 at 621.953 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 619,148 - +0.4 619,830 - CSW01_03145 0.16 -0.4 619,918 - CSW01_03145 0.22 -0.6 619,918 - CSW01_03145 0.22 -2.6 619,950 - CSW01_03145 0.24 +0.4 620,688 - CSW01_03145 0.78 -2.6 620,688 - CSW01_03145 0.78 -4.0 620,688 - CSW01_03145 0.78 +0.1 620,780 - CSW01_03145 0.85 -2.8 621,022 + -1.6 621,030 - +1.7 621,203 + CSW01_03150 0.14 +0.7 621,211 - CSW01_03150 0.15 +0.5 621,237 + CSW01_03150 0.18 -2.2 621,257 + CSW01_03150 0.20 +0.1 621,336 + CSW01_03150 0.29 -1.1 621,355 + CSW01_03150 0.31 -0.2 621,395 + CSW01_03150 0.36 +1.2 621,436 - CSW01_03150 0.40 +0.4 621,436 - CSW01_03150 0.40 -3.8 621,518 - CSW01_03150 0.49 +0.5 621,684 + CSW01_03150 0.68 -0.7 621,684 + CSW01_03150 0.68 -3.7 621,684 + CSW01_03150 0.68 +0.1 621,684 + CSW01_03150 0.68 +2.0 621,684 + CSW01_03150 0.68 +1.2 621,684 + CSW01_03150 0.68 -1.1 621,685 + CSW01_03150 0.68 -0.9 621,692 - CSW01_03150 0.69 +2.0 621,692 - CSW01_03150 0.69 -2.3 621,694 + CSW01_03150 0.69 -0.1 621,694 + CSW01_03150 0.69 -0.1 621,694 + CSW01_03150 0.69 -1.1 621,694 + CSW01_03150 0.69 +3.5 621,765 - CSW01_03150 0.77 -1.8 621,790 - CSW01_03150 0.80 -0.0 621,801 + CSW01_03150 0.81 +0.8 621,819 - CSW01_03150 0.83 +1.2 621,842 + CSW01_03150 0.86 -0.7 621,953 + -0.2
Or see this region's nucleotide sequence