Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03070 and CSW01_03075 are separated by 2 nucleotides CSW01_03075 and CSW01_03080 are separated by 3 nucleotides CSW01_03080 and CSW01_03085 overlap by 14 nucleotides
CSW01_03070: CSW01_03070 - hemolysin, at 606,831 to 607,400
_03070
CSW01_03075: CSW01_03075 - phosphoheptose isomerase, at 607,403 to 607,993
_03075
CSW01_03080: CSW01_03080 - YraN family protein, at 607,997 to 608,365
_03080
CSW01_03085: CSW01_03085 - penicillin-binding protein activator, at 608,352 to 610,157
_03085
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 607.099 kb on + strand, within CSW01_03070 at 607.200 kb on - strand, within CSW01_03070 at 607.327 kb on + strand, within CSW01_03070 at 607.337 kb on + strand, within CSW01_03070 at 607.355 kb on - strand at 607.355 kb on - strand at 607.357 kb on - strand at 607.385 kb on + strand at 607.393 kb on - strand at 607.393 kb on - strand at 607.393 kb on - strand at 607.454 kb on + strand at 607.459 kb on - strand at 607.917 kb on - strand, within CSW01_03075 at 607.922 kb on + strand, within CSW01_03075 at 608.041 kb on - strand, within CSW01_03080 at 608.143 kb on + strand, within CSW01_03080 at 608.143 kb on + strand, within CSW01_03080 at 608.220 kb on - strand, within CSW01_03080 at 608.220 kb on - strand, within CSW01_03080 at 608.284 kb on + strand, within CSW01_03080 at 608.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 607,099 + CSW01_03070 0.47 +1.4 607,200 - CSW01_03070 0.65 -1.1 607,327 + CSW01_03070 0.87 -0.1 607,337 + CSW01_03070 0.89 -0.7 607,355 - +2.4 607,355 - +1.5 607,357 - -2.2 607,385 + -2.2 607,393 - +2.2 607,393 - -1.4 607,393 - +1.8 607,454 + -2.1 607,459 - +0.9 607,917 - CSW01_03075 0.87 -0.6 607,922 + CSW01_03075 0.88 +1.5 608,041 - CSW01_03080 0.12 +1.1 608,143 + CSW01_03080 0.40 -1.9 608,143 + CSW01_03080 0.40 -0.8 608,220 - CSW01_03080 0.60 -1.4 608,220 - CSW01_03080 0.60 -3.4 608,284 + CSW01_03080 0.78 -0.6 608,360 + -2.8
Or see this region's nucleotide sequence