Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03035 and CSW01_03040 are separated by 15 nucleotides CSW01_03040 and CSW01_03045 are separated by 327 nucleotides CSW01_03045 and CSW01_03050 overlap by 1 nucleotides
CSW01_03035: CSW01_03035 - 50S ribosomal protein L13, at 601,796 to 602,224
_03035
CSW01_03040: CSW01_03040 - 30S ribosomal protein S9, at 602,240 to 602,632
_03040
CSW01_03045: CSW01_03045 - ubiquinol-cytochrome c reductase iron-sulfur subunit, at 602,960 to 603,553
_03045
CSW01_03050: CSW01_03050 - cytochrome b, at 603,553 to 604,818
_03050
Position (kb) 602
603
604 Strain fitness (log2 ratio) -2
-1
0
1
2 at 602.748 kb on + strand at 602.938 kb on + strand at 603.140 kb on - strand, within CSW01_03045 at 603.263 kb on - strand, within CSW01_03045 at 603.265 kb on + strand, within CSW01_03045 at 603.335 kb on + strand, within CSW01_03045 at 603.335 kb on + strand, within CSW01_03045 at 603.343 kb on - strand, within CSW01_03045 at 603.343 kb on - strand, within CSW01_03045 at 603.479 kb on - strand, within CSW01_03045 at 603.749 kb on + strand, within CSW01_03050 at 604.017 kb on + strand, within CSW01_03050 at 604.017 kb on + strand, within CSW01_03050 at 604.151 kb on - strand, within CSW01_03050 at 604.277 kb on - strand, within CSW01_03050 at 604.375 kb on + strand, within CSW01_03050 at 604.378 kb on - strand, within CSW01_03050
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 602,748 + -0.5 602,938 + -2.6 603,140 - CSW01_03045 0.30 -0.9 603,263 - CSW01_03045 0.51 +2.0 603,265 + CSW01_03045 0.51 -2.2 603,335 + CSW01_03045 0.63 -0.4 603,335 + CSW01_03045 0.63 -1.7 603,343 - CSW01_03045 0.64 -2.6 603,343 - CSW01_03045 0.64 -0.5 603,479 - CSW01_03045 0.87 -0.2 603,749 + CSW01_03050 0.15 -1.8 604,017 + CSW01_03050 0.37 -0.9 604,017 + CSW01_03050 0.37 -2.7 604,151 - CSW01_03050 0.47 -1.9 604,277 - CSW01_03050 0.57 -2.5 604,375 + CSW01_03050 0.65 -2.6 604,378 - CSW01_03050 0.65 -2.2
Or see this region's nucleotide sequence