Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03005 and CSW01_03010 are separated by 41 nucleotides CSW01_03010 and CSW01_03015 are separated by 120 nucleotides CSW01_03015 and CSW01_03020 are separated by 176 nucleotides
CSW01_03005: CSW01_03005 - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 595,885 to 596,628
_03005
CSW01_03010: CSW01_03010 - 50S ribosomal protein L19, at 596,670 to 597,023
_03010
CSW01_03015: CSW01_03015 - outer membrane-stress sensor serine endopeptidase DegS, at 597,144 to 598,202
_03015
CSW01_03020: CSW01_03020 - serine endoprotease DegQ, at 598,379 to 599,749
_03020
Position (kb) 597
598
599 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 597.156 kb on + strand at 597.156 kb on + strand at 598.251 kb on + strand at 598.259 kb on - strand at 598.259 kb on - strand at 598.259 kb on - strand at 598.360 kb on + strand at 598.360 kb on + strand at 598.406 kb on + strand at 598.414 kb on - strand at 598.414 kb on - strand at 598.494 kb on - strand at 598.568 kb on - strand, within CSW01_03020 at 598.574 kb on + strand, within CSW01_03020 at 598.575 kb on - strand, within CSW01_03020 at 598.582 kb on - strand, within CSW01_03020 at 598.592 kb on - strand, within CSW01_03020 at 598.604 kb on + strand, within CSW01_03020 at 598.604 kb on + strand, within CSW01_03020 at 598.604 kb on + strand, within CSW01_03020 at 598.612 kb on - strand, within CSW01_03020 at 598.612 kb on - strand, within CSW01_03020 at 598.612 kb on - strand, within CSW01_03020 at 598.619 kb on + strand, within CSW01_03020 at 598.714 kb on + strand, within CSW01_03020 at 598.722 kb on - strand, within CSW01_03020 at 598.765 kb on + strand, within CSW01_03020 at 598.773 kb on - strand, within CSW01_03020 at 598.773 kb on - strand, within CSW01_03020 at 599.012 kb on + strand, within CSW01_03020 at 599.030 kb on - strand, within CSW01_03020 at 599.079 kb on + strand, within CSW01_03020 at 599.087 kb on - strand, within CSW01_03020 at 599.087 kb on - strand, within CSW01_03020 at 599.087 kb on - strand, within CSW01_03020 at 599.135 kb on - strand, within CSW01_03020 at 599.135 kb on - strand, within CSW01_03020 at 599.162 kb on + strand, within CSW01_03020 at 599.162 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020 at 599.177 kb on + strand, within CSW01_03020
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 597,156 + -2.6 597,156 + -1.3 598,251 + -0.7 598,259 - -2.2 598,259 - -1.5 598,259 - -0.5 598,360 + -0.1 598,360 + -0.0 598,406 + +0.3 598,414 - +0.3 598,414 - -4.1 598,494 - +0.4 598,568 - CSW01_03020 0.14 +0.8 598,574 + CSW01_03020 0.14 -3.5 598,575 - CSW01_03020 0.14 -1.3 598,582 - CSW01_03020 0.15 +1.4 598,592 - CSW01_03020 0.16 -0.1 598,604 + CSW01_03020 0.16 -1.8 598,604 + CSW01_03020 0.16 -1.0 598,604 + CSW01_03020 0.16 +0.0 598,612 - CSW01_03020 0.17 +1.5 598,612 - CSW01_03020 0.17 -0.0 598,612 - CSW01_03020 0.17 -0.6 598,619 + CSW01_03020 0.18 +1.3 598,714 + CSW01_03020 0.24 -3.8 598,722 - CSW01_03020 0.25 -1.9 598,765 + CSW01_03020 0.28 +1.5 598,773 - CSW01_03020 0.29 +0.9 598,773 - CSW01_03020 0.29 +0.5 599,012 + CSW01_03020 0.46 -0.5 599,030 - CSW01_03020 0.47 -1.1 599,079 + CSW01_03020 0.51 -2.3 599,087 - CSW01_03020 0.52 -2.1 599,087 - CSW01_03020 0.52 +1.1 599,087 - CSW01_03020 0.52 -1.2 599,135 - CSW01_03020 0.55 -0.6 599,135 - CSW01_03020 0.55 +1.1 599,162 + CSW01_03020 0.57 -3.2 599,162 + CSW01_03020 0.57 +0.8 599,177 + CSW01_03020 0.58 +0.4 599,177 + CSW01_03020 0.58 -1.4 599,177 + CSW01_03020 0.58 -2.2 599,177 + CSW01_03020 0.58 -2.6 599,177 + CSW01_03020 0.58 +2.6 599,177 + CSW01_03020 0.58 -0.1
Or see this region's nucleotide sequence