Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02980

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02970 and CSW01_02975 are separated by 48 nucleotidesCSW01_02975 and CSW01_02980 are separated by 69 nucleotidesCSW01_02980 and CSW01_02985 are separated by 82 nucleotides CSW01_02970: CSW01_02970 - glutamate--cysteine ligase, at 588,825 to 590,399 _02970 CSW01_02975: CSW01_02975 - S-ribosylhomocysteine lyase, at 590,448 to 590,966 _02975 CSW01_02980: CSW01_02980 - HlyC/CorC family transporter, at 591,036 to 592,316 _02980 CSW01_02985: CSW01_02985 - inner membrane protein YpjD, at 592,399 to 593,193 _02985 Position (kb) 591 592 593Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 590.038 kb on + strand, within CSW01_02970at 590.085 kb on + strand, within CSW01_02970at 590.163 kb on + strand, within CSW01_02970at 590.171 kb on - strand, within CSW01_02970at 590.226 kb on + strand, within CSW01_02970at 590.315 kb on - strandat 590.315 kb on - strandat 590.464 kb on + strandat 590.464 kb on + strandat 590.492 kb on - strandat 590.527 kb on + strand, within CSW01_02975at 590.527 kb on + strand, within CSW01_02975at 590.550 kb on - strand, within CSW01_02975at 590.561 kb on + strand, within CSW01_02975at 590.648 kb on + strand, within CSW01_02975at 590.659 kb on + strand, within CSW01_02975at 590.672 kb on - strand, within CSW01_02975at 590.703 kb on + strand, within CSW01_02975at 590.836 kb on - strand, within CSW01_02975at 590.920 kb on + strandat 590.928 kb on - strandat 590.930 kb on + strandat 590.938 kb on - strandat 590.948 kb on - strandat 591.005 kb on - strandat 591.034 kb on + strandat 591.042 kb on - strandat 591.070 kb on + strandat 591.088 kb on - strandat 591.169 kb on - strand, within CSW01_02980at 591.216 kb on - strand, within CSW01_02980at 591.231 kb on + strand, within CSW01_02980at 591.266 kb on - strand, within CSW01_02980at 591.282 kb on + strand, within CSW01_02980at 591.308 kb on + strand, within CSW01_02980at 591.308 kb on + strand, within CSW01_02980at 591.443 kb on + strand, within CSW01_02980at 591.443 kb on + strand, within CSW01_02980at 591.462 kb on + strand, within CSW01_02980at 591.493 kb on + strand, within CSW01_02980at 591.548 kb on - strand, within CSW01_02980at 591.617 kb on - strand, within CSW01_02980at 591.724 kb on - strand, within CSW01_02980at 591.770 kb on - strand, within CSW01_02980at 591.800 kb on - strand, within CSW01_02980at 591.830 kb on + strand, within CSW01_02980at 591.860 kb on + strand, within CSW01_02980at 591.863 kb on - strand, within CSW01_02980at 591.895 kb on + strand, within CSW01_02980at 591.895 kb on + strand, within CSW01_02980at 591.896 kb on - strand, within CSW01_02980at 591.953 kb on - strand, within CSW01_02980at 591.963 kb on - strand, within CSW01_02980at 592.012 kb on + strand, within CSW01_02980at 592.118 kb on + strand, within CSW01_02980at 592.141 kb on + strand, within CSW01_02980at 592.207 kb on + strandat 592.392 kb on + strandat 592.400 kb on - strandat 592.400 kb on - strandat 592.411 kb on + strandat 592.447 kb on + strandat 592.495 kb on + strand, within CSW01_02985at 592.550 kb on + strand, within CSW01_02985at 592.606 kb on + strand, within CSW01_02985at 592.753 kb on + strand, within CSW01_02985at 592.765 kb on + strand, within CSW01_02985at 592.780 kb on + strand, within CSW01_02985at 592.783 kb on - strand, within CSW01_02985at 592.798 kb on + strand, within CSW01_02985at 592.808 kb on + strand, within CSW01_02985at 592.808 kb on + strand, within CSW01_02985at 592.870 kb on + strand, within CSW01_02985at 592.959 kb on + strand, within CSW01_02985at 592.962 kb on - strand, within CSW01_02985at 593.029 kb on - strand, within CSW01_02985at 593.029 kb on - strand, within CSW01_02985at 593.029 kb on - strand, within CSW01_02985at 593.067 kb on - strand, within CSW01_02985at 593.136 kb on - strandat 593.161 kb on - strandat 593.161 kb on - strandat 593.196 kb on - strandat 593.196 kb on - strandat 593.196 kb on - strandat 593.214 kb on - strandat 593.219 kb on - strandat 593.219 kb on - strandat 593.219 kb on - strandat 593.236 kb on + strandat 593.236 kb on + strandat 593.239 kb on - strandat 593.249 kb on - strandat 593.254 kb on + strandat 593.257 kb on - strandat 593.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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590,038 + CSW01_02970 0.77 +0.6
590,085 + CSW01_02970 0.80 -3.1
590,163 + CSW01_02970 0.85 -1.8
590,171 - CSW01_02970 0.85 +1.9
590,226 + CSW01_02970 0.89 +0.3
590,315 - -1.2
590,315 - -2.8
590,464 + +0.9
590,464 + -3.1
590,492 - +1.1
590,527 + CSW01_02975 0.15 +1.0
590,527 + CSW01_02975 0.15 +0.2
590,550 - CSW01_02975 0.20 +0.2
590,561 + CSW01_02975 0.22 +0.5
590,648 + CSW01_02975 0.39 +0.2
590,659 + CSW01_02975 0.41 +2.2
590,672 - CSW01_02975 0.43 -1.4
590,703 + CSW01_02975 0.49 +1.3
590,836 - CSW01_02975 0.75 -0.0
590,920 + +0.1
590,928 - -1.4
590,930 + -0.1
590,938 - -2.7
590,948 - +1.5
591,005 - -1.1
591,034 + +1.0
591,042 - +0.8
591,070 + +0.2
591,088 - -2.2
591,169 - CSW01_02980 0.10 -0.9
591,216 - CSW01_02980 0.14 +1.3
591,231 + CSW01_02980 0.15 -0.9
591,266 - CSW01_02980 0.18 -1.1
591,282 + CSW01_02980 0.19 -1.6
591,308 + CSW01_02980 0.21 -1.7
591,308 + CSW01_02980 0.21 -1.5
591,443 + CSW01_02980 0.32 -3.9
591,443 + CSW01_02980 0.32 -2.4
591,462 + CSW01_02980 0.33 -2.5
591,493 + CSW01_02980 0.36 +0.4
591,548 - CSW01_02980 0.40 -1.9
591,617 - CSW01_02980 0.45 +0.3
591,724 - CSW01_02980 0.54 -1.1
591,770 - CSW01_02980 0.57 -3.0
591,800 - CSW01_02980 0.60 -0.2
591,830 + CSW01_02980 0.62 -2.3
591,860 + CSW01_02980 0.64 -0.8
591,863 - CSW01_02980 0.65 -2.1
591,895 + CSW01_02980 0.67 -2.1
591,895 + CSW01_02980 0.67 +0.4
591,896 - CSW01_02980 0.67 -0.2
591,953 - CSW01_02980 0.72 -2.3
591,963 - CSW01_02980 0.72 -0.7
592,012 + CSW01_02980 0.76 +0.4
592,118 + CSW01_02980 0.84 -2.3
592,141 + CSW01_02980 0.86 -3.5
592,207 + +0.9
592,392 + -3.4
592,400 - +0.7
592,400 - +0.0
592,411 + -2.0
592,447 + +0.6
592,495 + CSW01_02985 0.12 -2.5
592,550 + CSW01_02985 0.19 -0.3
592,606 + CSW01_02985 0.26 -2.7
592,753 + CSW01_02985 0.45 -2.4
592,765 + CSW01_02985 0.46 -0.6
592,780 + CSW01_02985 0.48 -0.1
592,783 - CSW01_02985 0.48 +2.5
592,798 + CSW01_02985 0.50 -1.7
592,808 + CSW01_02985 0.51 +0.8
592,808 + CSW01_02985 0.51 +0.5
592,870 + CSW01_02985 0.59 +2.1
592,959 + CSW01_02985 0.70 -3.4
592,962 - CSW01_02985 0.71 +0.1
593,029 - CSW01_02985 0.79 +0.2
593,029 - CSW01_02985 0.79 +0.8
593,029 - CSW01_02985 0.79 -2.5
593,067 - CSW01_02985 0.84 -1.8
593,136 - +0.1
593,161 - +0.5
593,161 - +1.1
593,196 - +0.5
593,196 - +0.7
593,196 - -1.6
593,214 - -2.1
593,219 - -0.6
593,219 - -0.1
593,219 - -3.6
593,236 + -0.0
593,236 + -3.1
593,239 - +0.4
593,249 - -0.2
593,254 + -0.7
593,257 - -1.1
593,288 - +0.2

Or see this region's nucleotide sequence