Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02850

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02845 and CSW01_02850 are separated by 383 nucleotidesCSW01_02850 and CSW01_02855 are separated by 76 nucleotidesCSW01_02855 and CSW01_02860 are separated by 10 nucleotides CSW01_02845: CSW01_02845 - cysteine synthase CysM, at 567,429 to 568,316 _02845 CSW01_02850: CSW01_02850 - sulfate ABC transporter substrate-binding protein, at 568,700 to 569,701 _02850 CSW01_02855: CSW01_02855 - sulfate/thiosulfate ABC transporter permease CysT, at 569,778 to 570,629 _02855 CSW01_02860: CSW01_02860 - sulfate ABC transporter permease subunit CysW, at 570,640 to 571,503 _02860 Position (kb) 568 569 570Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 567.712 kb on - strand, within CSW01_02845at 567.735 kb on - strand, within CSW01_02845at 567.874 kb on - strand, within CSW01_02845at 567.879 kb on - strand, within CSW01_02845at 567.879 kb on - strand, within CSW01_02845at 567.906 kb on + strand, within CSW01_02845at 567.927 kb on + strand, within CSW01_02845at 567.957 kb on + strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.991 kb on - strand, within CSW01_02845at 568.002 kb on + strand, within CSW01_02845at 568.010 kb on - strand, within CSW01_02845at 568.019 kb on + strand, within CSW01_02845at 568.019 kb on + strand, within CSW01_02845at 568.061 kb on - strand, within CSW01_02845at 568.075 kb on + strand, within CSW01_02845at 568.088 kb on - strand, within CSW01_02845at 568.141 kb on - strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.188 kb on - strand, within CSW01_02845at 568.188 kb on - strand, within CSW01_02845at 568.232 kb on + strandat 568.241 kb on + strandat 568.246 kb on + strandat 568.246 kb on + strandat 568.254 kb on - strandat 568.274 kb on - strandat 568.292 kb on + strandat 568.292 kb on + strandat 568.298 kb on - strandat 568.300 kb on - strandat 568.300 kb on - strandat 568.308 kb on + strandat 568.318 kb on + strandat 568.365 kb on - strandat 568.441 kb on + strandat 568.474 kb on + strandat 568.567 kb on - strandat 568.653 kb on + strandat 568.653 kb on + strandat 568.653 kb on + strandat 568.800 kb on + strandat 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.832 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.909 kb on - strand, within CSW01_02850at 568.919 kb on + strand, within CSW01_02850at 568.988 kb on + strand, within CSW01_02850at 569.087 kb on - strand, within CSW01_02850at 569.158 kb on - strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.228 kb on - strand, within CSW01_02850at 569.280 kb on - strand, within CSW01_02850at 569.338 kb on - strand, within CSW01_02850at 569.348 kb on - strand, within CSW01_02850at 569.461 kb on + strand, within CSW01_02850at 569.503 kb on + strand, within CSW01_02850at 569.504 kb on - strand, within CSW01_02850at 569.514 kb on + strand, within CSW01_02850at 569.559 kb on + strand, within CSW01_02850at 569.567 kb on - strand, within CSW01_02850at 569.621 kb on - strandat 569.623 kb on - strandat 569.743 kb on + strandat 569.751 kb on - strandat 569.751 kb on - strandat 569.788 kb on + strandat 569.893 kb on - strand, within CSW01_02855at 569.898 kb on - strand, within CSW01_02855at 569.979 kb on - strand, within CSW01_02855at 570.019 kb on - strand, within CSW01_02855at 570.092 kb on + strand, within CSW01_02855at 570.113 kb on + strand, within CSW01_02855at 570.121 kb on - strand, within CSW01_02855at 570.172 kb on + strand, within CSW01_02855at 570.194 kb on - strand, within CSW01_02855at 570.228 kb on - strand, within CSW01_02855at 570.245 kb on - strand, within CSW01_02855at 570.270 kb on + strand, within CSW01_02855at 570.273 kb on - strand, within CSW01_02855at 570.315 kb on + strand, within CSW01_02855at 570.322 kb on + strand, within CSW01_02855at 570.330 kb on - strand, within CSW01_02855at 570.365 kb on - strand, within CSW01_02855at 570.402 kb on - strand, within CSW01_02855at 570.407 kb on - strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.418 kb on + strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.426 kb on - strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.428 kb on + strand, within CSW01_02855at 570.436 kb on - strand, within CSW01_02855at 570.470 kb on - strand, within CSW01_02855at 570.598 kb on + strandat 570.598 kb on + strandat 570.606 kb on - strandat 570.606 kb on - strandat 570.648 kb on + strandat 570.648 kb on + strandat 570.656 kb on - strandat 570.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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567,712 - CSW01_02845 0.32 -3.8
567,735 - CSW01_02845 0.34 -2.4
567,874 - CSW01_02845 0.50 -1.8
567,879 - CSW01_02845 0.51 -4.9
567,879 - CSW01_02845 0.51 -2.8
567,906 + CSW01_02845 0.54 -1.8
567,927 + CSW01_02845 0.56 -0.5
567,957 + CSW01_02845 0.59 +0.9
567,965 - CSW01_02845 0.60 +1.2
567,965 - CSW01_02845 0.60 +0.7
567,965 - CSW01_02845 0.60 +1.3
567,991 - CSW01_02845 0.63 +0.1
568,002 + CSW01_02845 0.65 +1.5
568,010 - CSW01_02845 0.65 +1.4
568,019 + CSW01_02845 0.66 -0.6
568,019 + CSW01_02845 0.66 +0.9
568,061 - CSW01_02845 0.71 -1.1
568,075 + CSW01_02845 0.73 -0.2
568,088 - CSW01_02845 0.74 +1.0
568,141 - CSW01_02845 0.80 +1.4
568,180 + CSW01_02845 0.85 -2.1
568,180 + CSW01_02845 0.85 -3.7
568,180 + CSW01_02845 0.85 +1.0
568,188 - CSW01_02845 0.85 +2.3
568,188 - CSW01_02845 0.85 +0.6
568,232 + +0.3
568,241 + -0.3
568,246 + -0.7
568,246 + +0.3
568,254 - -4.6
568,274 - +1.1
568,292 + +0.2
568,292 + +0.1
568,298 - +0.2
568,300 - -0.4
568,300 - +0.5
568,308 + -1.3
568,318 + +0.5
568,365 - -1.7
568,441 + -1.4
568,474 + -0.7
568,567 - -0.2
568,653 + -2.2
568,653 + -3.1
568,653 + +0.2
568,800 + +1.1
568,818 - CSW01_02850 0.12 -4.1
568,818 - CSW01_02850 0.12 -0.2
568,818 - CSW01_02850 0.12 -0.8
568,832 - CSW01_02850 0.13 +0.7
568,880 - CSW01_02850 0.18 -0.5
568,880 - CSW01_02850 0.18 +3.1
568,909 - CSW01_02850 0.21 -0.2
568,919 + CSW01_02850 0.22 +0.6
568,988 + CSW01_02850 0.29 +1.6
569,087 - CSW01_02850 0.39 +0.8
569,158 - CSW01_02850 0.46 -0.9
569,183 + CSW01_02850 0.48 -4.3
569,183 + CSW01_02850 0.48 +0.2
569,183 + CSW01_02850 0.48 -3.9
569,183 + CSW01_02850 0.48 +3.2
569,191 - CSW01_02850 0.49 +0.7
569,191 - CSW01_02850 0.49 +1.8
569,215 + CSW01_02850 0.51 -0.2
569,215 + CSW01_02850 0.51 +1.7
569,223 - CSW01_02850 0.52 -0.4
569,223 - CSW01_02850 0.52 -3.0
569,223 - CSW01_02850 0.52 +2.3
569,228 - CSW01_02850 0.53 +1.0
569,280 - CSW01_02850 0.58 +0.6
569,338 - CSW01_02850 0.64 +0.5
569,348 - CSW01_02850 0.65 +0.8
569,461 + CSW01_02850 0.76 +0.7
569,503 + CSW01_02850 0.80 -1.4
569,504 - CSW01_02850 0.80 -2.6
569,514 + CSW01_02850 0.81 +0.3
569,559 + CSW01_02850 0.86 +0.7
569,567 - CSW01_02850 0.87 -2.1
569,621 - -0.5
569,623 - +1.1
569,743 + +0.2
569,751 - -1.8
569,751 - -3.8
569,788 + +2.3
569,893 - CSW01_02855 0.13 -2.4
569,898 - CSW01_02855 0.14 +0.1
569,979 - CSW01_02855 0.24 -1.2
570,019 - CSW01_02855 0.28 +1.7
570,092 + CSW01_02855 0.37 -0.8
570,113 + CSW01_02855 0.39 -0.9
570,121 - CSW01_02855 0.40 +1.7
570,172 + CSW01_02855 0.46 +0.4
570,194 - CSW01_02855 0.49 -0.8
570,228 - CSW01_02855 0.53 +1.8
570,245 - CSW01_02855 0.55 -1.1
570,270 + CSW01_02855 0.58 -1.4
570,273 - CSW01_02855 0.58 +3.3
570,315 + CSW01_02855 0.63 +0.1
570,322 + CSW01_02855 0.64 +0.1
570,330 - CSW01_02855 0.65 +0.6
570,365 - CSW01_02855 0.69 -0.7
570,402 - CSW01_02855 0.73 +0.2
570,407 - CSW01_02855 0.74 -2.6
570,418 + CSW01_02855 0.75 +0.3
570,418 + CSW01_02855 0.75 -0.1
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 +0.7
570,418 + CSW01_02855 0.75 -0.9
570,418 + CSW01_02855 0.75 -2.5
570,418 + CSW01_02855 0.75 +0.2
570,418 + CSW01_02855 0.75 -0.1
570,418 + CSW01_02855 0.75 -0.8
570,418 + CSW01_02855 0.75 +2.3
570,418 + CSW01_02855 0.75 -1.7
570,426 - CSW01_02855 0.76 +1.1
570,426 - CSW01_02855 0.76 +2.0
570,426 - CSW01_02855 0.76 -0.1
570,426 - CSW01_02855 0.76 -1.4
570,426 - CSW01_02855 0.76 -1.3
570,426 - CSW01_02855 0.76 -0.2
570,426 - CSW01_02855 0.76 -3.5
570,426 - CSW01_02855 0.76 +0.3
570,426 - CSW01_02855 0.76 -1.1
570,426 - CSW01_02855 0.76 -2.6
570,426 - CSW01_02855 0.76 +0.6
570,426 - CSW01_02855 0.76 +1.1
570,426 - CSW01_02855 0.76 +1.2
570,428 + CSW01_02855 0.76 -4.0
570,428 + CSW01_02855 0.76 -0.2
570,428 + CSW01_02855 0.76 +1.6
570,436 - CSW01_02855 0.77 +1.9
570,470 - CSW01_02855 0.81 +0.9
570,598 + -0.6
570,598 + +1.8
570,606 - +0.1
570,606 - +1.8
570,648 + -0.6
570,648 + +1.1
570,656 - +1.1
570,656 - +0.4

Or see this region's nucleotide sequence