Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02690

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02680 and CSW01_02685 are separated by 138 nucleotidesCSW01_02685 and CSW01_02690 are separated by 3 nucleotidesCSW01_02690 and CSW01_02695 are separated by 50 nucleotidesCSW01_02695 and CSW01_02700 overlap by 10 nucleotides CSW01_02680: CSW01_02680 - WYL domain-containing protein, at 536,290 to 537,024 _02680 CSW01_02685: CSW01_02685 - hypothetical protein, at 537,163 to 537,339 _02685 CSW01_02690: CSW01_02690 - DUF2787 domain-containing protein, at 537,343 to 537,786 _02690 CSW01_02695: CSW01_02695 - DUF2787 domain-containing protein, at 537,837 to 538,280 _02695 CSW01_02700: CSW01_02700 - hypothetical protein, at 538,271 to 538,744 _02700 Position (kb) 537 538Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 536.365 kb on + strand, within CSW01_02680at 536.385 kb on - strand, within CSW01_02680at 536.404 kb on + strand, within CSW01_02680at 536.412 kb on - strand, within CSW01_02680at 536.419 kb on - strand, within CSW01_02680at 536.455 kb on + strand, within CSW01_02680at 536.464 kb on - strand, within CSW01_02680at 536.485 kb on - strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.526 kb on + strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.534 kb on - strand, within CSW01_02680at 536.560 kb on + strand, within CSW01_02680at 536.582 kb on + strand, within CSW01_02680at 536.679 kb on - strand, within CSW01_02680at 536.723 kb on - strand, within CSW01_02680at 536.751 kb on + strand, within CSW01_02680at 536.846 kb on + strand, within CSW01_02680at 536.853 kb on + strand, within CSW01_02680at 536.880 kb on + strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.888 kb on - strand, within CSW01_02680at 536.916 kb on + strand, within CSW01_02680at 536.924 kb on - strand, within CSW01_02680at 536.937 kb on + strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.945 kb on - strand, within CSW01_02680at 536.964 kb on - strandat 536.964 kb on - strandat 536.968 kb on + strandat 536.990 kb on + strandat 537.019 kb on + strandat 537.054 kb on - strandat 537.062 kb on - strandat 537.082 kb on + strandat 537.082 kb on + strandat 537.145 kb on + strandat 537.148 kb on - strandat 537.170 kb on + strandat 537.170 kb on + strandat 537.178 kb on - strandat 537.178 kb on - strandat 537.182 kb on + strand, within CSW01_02685at 537.190 kb on - strand, within CSW01_02685at 537.197 kb on - strand, within CSW01_02685at 537.205 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.235 kb on + strand, within CSW01_02685at 537.243 kb on - strand, within CSW01_02685at 537.286 kb on - strand, within CSW01_02685at 537.335 kb on - strandat 537.343 kb on - strandat 537.343 kb on - strandat 537.353 kb on + strandat 537.355 kb on + strandat 537.527 kb on - strand, within CSW01_02690at 537.561 kb on + strand, within CSW01_02690at 537.569 kb on - strand, within CSW01_02690at 537.581 kb on + strand, within CSW01_02690at 537.612 kb on + strand, within CSW01_02690at 537.630 kb on - strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.684 kb on + strand, within CSW01_02690at 537.692 kb on - strand, within CSW01_02690at 537.705 kb on - strand, within CSW01_02690at 537.757 kb on + strandat 537.760 kb on - strandat 537.836 kb on - strandat 537.856 kb on - strandat 537.953 kb on + strand, within CSW01_02695at 537.953 kb on + strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 537.961 kb on - strand, within CSW01_02695at 538.022 kb on + strand, within CSW01_02695at 538.032 kb on + strand, within CSW01_02695at 538.035 kb on - strand, within CSW01_02695at 538.056 kb on + strand, within CSW01_02695at 538.062 kb on + strand, within CSW01_02695at 538.067 kb on + strand, within CSW01_02695at 538.079 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.096 kb on + strand, within CSW01_02695at 538.104 kb on - strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.118 kb on + strand, within CSW01_02695at 538.119 kb on + strand, within CSW01_02695at 538.255 kb on + strandat 538.255 kb on + strandat 538.255 kb on + strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.263 kb on - strandat 538.278 kb on - strandat 538.312 kb on - strandat 538.312 kb on - strandat 538.318 kb on + strandat 538.322 kb on - strand, within CSW01_02700at 538.398 kb on + strand, within CSW01_02700at 538.446 kb on - strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.483 kb on + strand, within CSW01_02700at 538.509 kb on - strand, within CSW01_02700at 538.517 kb on - strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.565 kb on + strand, within CSW01_02700at 538.573 kb on - strand, within CSW01_02700at 538.579 kb on - strand, within CSW01_02700at 538.579 kb on - strand, within CSW01_02700at 538.589 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.631 kb on + strand, within CSW01_02700at 538.636 kb on + strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.639 kb on - strand, within CSW01_02700at 538.690 kb on - strand, within CSW01_02700at 538.772 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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536,365 + CSW01_02680 0.10 -2.4
536,385 - CSW01_02680 0.13 -0.0
536,404 + CSW01_02680 0.16 -1.6
536,412 - CSW01_02680 0.17 +1.4
536,419 - CSW01_02680 0.18 +0.4
536,455 + CSW01_02680 0.22 -0.7
536,464 - CSW01_02680 0.24 +1.9
536,485 - CSW01_02680 0.27 +1.5
536,526 + CSW01_02680 0.32 +1.3
536,526 + CSW01_02680 0.32 -2.6
536,526 + CSW01_02680 0.32 +1.5
536,534 - CSW01_02680 0.33 +0.0
536,534 - CSW01_02680 0.33 +0.9
536,560 + CSW01_02680 0.37 +1.4
536,582 + CSW01_02680 0.40 +0.4
536,679 - CSW01_02680 0.53 +0.3
536,723 - CSW01_02680 0.59 -1.3
536,751 + CSW01_02680 0.63 -0.5
536,846 + CSW01_02680 0.76 -0.5
536,853 + CSW01_02680 0.77 -1.7
536,880 + CSW01_02680 0.80 -2.0
536,888 - CSW01_02680 0.81 -4.5
536,888 - CSW01_02680 0.81 +1.1
536,916 + CSW01_02680 0.85 -3.1
536,924 - CSW01_02680 0.86 -0.6
536,937 + CSW01_02680 0.88 +0.4
536,945 - CSW01_02680 0.89 +1.7
536,945 - CSW01_02680 0.89 -2.2
536,964 - +1.5
536,964 - -0.1
536,968 + +1.3
536,990 + +1.3
537,019 + +1.1
537,054 - -2.3
537,062 - -1.5
537,082 + +0.7
537,082 + +0.8
537,145 + -1.4
537,148 - +2.0
537,170 + -1.3
537,170 + +0.8
537,178 - +0.9
537,178 - -2.7
537,182 + CSW01_02685 0.11 +2.3
537,190 - CSW01_02685 0.15 -0.2
537,197 - CSW01_02685 0.19 +0.5
537,205 + CSW01_02685 0.24 -0.3
537,235 + CSW01_02685 0.41 +0.8
537,235 + CSW01_02685 0.41 -0.5
537,235 + CSW01_02685 0.41 +0.8
537,243 - CSW01_02685 0.45 -0.8
537,286 - CSW01_02685 0.69 +0.6
537,335 - -2.2
537,343 - -4.1
537,343 - -1.1
537,353 + -0.3
537,355 + -1.1
537,527 - CSW01_02690 0.41 -3.6
537,561 + CSW01_02690 0.49 +3.4
537,569 - CSW01_02690 0.51 -3.7
537,581 + CSW01_02690 0.54 +2.1
537,612 + CSW01_02690 0.61 -0.5
537,630 - CSW01_02690 0.65 +0.2
537,684 + CSW01_02690 0.77 -3.9
537,684 + CSW01_02690 0.77 +0.1
537,692 - CSW01_02690 0.79 -3.3
537,705 - CSW01_02690 0.82 -0.9
537,757 + -0.8
537,760 - -3.5
537,836 - +0.1
537,856 - -0.1
537,953 + CSW01_02695 0.26 +0.5
537,953 + CSW01_02695 0.26 -2.1
537,961 - CSW01_02695 0.28 +1.3
537,961 - CSW01_02695 0.28 +0.3
538,022 + CSW01_02695 0.42 +0.6
538,032 + CSW01_02695 0.44 -1.1
538,035 - CSW01_02695 0.45 -2.2
538,056 + CSW01_02695 0.49 -0.7
538,062 + CSW01_02695 0.51 +2.0
538,067 + CSW01_02695 0.52 -2.4
538,079 + CSW01_02695 0.55 +0.8
538,096 + CSW01_02695 0.58 -0.6
538,096 + CSW01_02695 0.58 -2.8
538,104 - CSW01_02695 0.60 -1.2
538,118 + CSW01_02695 0.63 -2.2
538,118 + CSW01_02695 0.63 -1.1
538,119 + CSW01_02695 0.64 +0.7
538,255 + -1.2
538,255 + +0.6
538,255 + -1.7
538,263 - +1.4
538,263 - +0.9
538,263 - -0.4
538,263 - -2.2
538,278 - +1.3
538,312 - -2.3
538,312 - +1.2
538,318 + +0.8
538,322 - CSW01_02700 0.11 -1.4
538,398 + CSW01_02700 0.27 +1.8
538,446 - CSW01_02700 0.37 -1.3
538,483 + CSW01_02700 0.45 +0.8
538,483 + CSW01_02700 0.45 +0.4
538,483 + CSW01_02700 0.45 +0.3
538,509 - CSW01_02700 0.50 -3.3
538,517 - CSW01_02700 0.52 -0.6
538,565 + CSW01_02700 0.62 -1.8
538,565 + CSW01_02700 0.62 +1.6
538,565 + CSW01_02700 0.62 +0.8
538,573 - CSW01_02700 0.64 -2.0
538,579 - CSW01_02700 0.65 +0.5
538,579 - CSW01_02700 0.65 +0.3
538,589 + CSW01_02700 0.67 -2.1
538,631 + CSW01_02700 0.76 -0.3
538,631 + CSW01_02700 0.76 -0.6
538,631 + CSW01_02700 0.76 -0.8
538,631 + CSW01_02700 0.76 -0.3
538,636 + CSW01_02700 0.77 +0.9
538,639 - CSW01_02700 0.78 +1.2
538,639 - CSW01_02700 0.78 -3.0
538,639 - CSW01_02700 0.78 -1.4
538,690 - CSW01_02700 0.88 -1.5
538,772 + +1.4

Or see this region's nucleotide sequence