Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02660

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02655 and CSW01_02660 are separated by 273 nucleotidesCSW01_02660 and CSW01_02665 are separated by 176 nucleotides CSW01_02655: CSW01_02655 - type II secretion system protein, at 532,938 to 533,462 _02655 CSW01_02660: CSW01_02660 - high-affinity zinc uptake system protein ZnuA precursor, at 533,736 to 533,981 _02660 CSW01_02665: CSW01_02665 - peptidase M23, at 534,158 to 535,438 _02665 Position (kb) 533 534Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 532.746 kb on + strandat 532.748 kb on - strandat 532.761 kb on + strandat 532.769 kb on + strandat 532.769 kb on + strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.777 kb on - strandat 532.918 kb on + strandat 532.970 kb on - strandat 533.109 kb on - strand, within CSW01_02655at 533.143 kb on + strand, within CSW01_02655at 533.162 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.163 kb on - strand, within CSW01_02655at 533.248 kb on + strand, within CSW01_02655at 533.255 kb on - strand, within CSW01_02655at 533.256 kb on - strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.292 kb on + strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.300 kb on - strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.329 kb on + strand, within CSW01_02655at 533.337 kb on - strand, within CSW01_02655at 533.341 kb on + strand, within CSW01_02655at 533.350 kb on + strand, within CSW01_02655at 533.389 kb on - strand, within CSW01_02655at 533.415 kb on - strandat 533.430 kb on - strandat 533.446 kb on - strandat 533.507 kb on + strandat 533.515 kb on - strandat 533.538 kb on - strandat 533.654 kb on - strandat 533.679 kb on + strandat 533.689 kb on + strandat 533.697 kb on - strandat 533.697 kb on - strandat 533.723 kb on - strandat 533.750 kb on - strandat 533.891 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.896 kb on + strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.904 kb on - strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.911 kb on + strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.919 kb on - strand, within CSW01_02660at 533.945 kb on + strand, within CSW01_02660at 533.989 kb on + strandat 534.006 kb on - strandat 534.028 kb on - strandat 534.055 kb on - strandat 534.062 kb on + strandat 534.062 kb on + strandat 534.089 kb on - strandat 534.268 kb on - strandat 534.268 kb on - strandat 534.300 kb on + strand, within CSW01_02665at 534.349 kb on - strand, within CSW01_02665at 534.417 kb on - strand, within CSW01_02665at 534.418 kb on - strand, within CSW01_02665at 534.468 kb on - strand, within CSW01_02665at 534.526 kb on - strand, within CSW01_02665at 534.549 kb on + strand, within CSW01_02665at 534.556 kb on + strand, within CSW01_02665at 534.571 kb on - strand, within CSW01_02665at 534.583 kb on - strand, within CSW01_02665at 534.664 kb on + strand, within CSW01_02665at 534.671 kb on + strand, within CSW01_02665at 534.799 kb on + strand, within CSW01_02665at 534.817 kb on - strand, within CSW01_02665at 534.840 kb on - strand, within CSW01_02665at 534.898 kb on + strand, within CSW01_02665at 534.919 kb on - strand, within CSW01_02665at 534.921 kb on + strand, within CSW01_02665at 534.929 kb on - strand, within CSW01_02665at 534.942 kb on - strand, within CSW01_02665at 534.947 kb on + strand, within CSW01_02665at 534.948 kb on - strand, within CSW01_02665at 534.952 kb on + strand, within CSW01_02665at 534.955 kb on - strand, within CSW01_02665

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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532,746 + +1.0
532,748 - -1.0
532,761 + +0.7
532,769 + +0.5
532,769 + +0.2
532,777 - -1.1
532,777 - +0.3
532,777 - +1.1
532,918 + -0.0
532,970 - -3.2
533,109 - CSW01_02655 0.33 -1.3
533,143 + CSW01_02655 0.39 +0.8
533,162 - CSW01_02655 0.43 -3.7
533,163 - CSW01_02655 0.43 -0.0
533,163 - CSW01_02655 0.43 +0.2
533,248 + CSW01_02655 0.59 +1.2
533,255 - CSW01_02655 0.60 -1.2
533,256 - CSW01_02655 0.61 +1.0
533,292 + CSW01_02655 0.67 +1.0
533,292 + CSW01_02655 0.67 -2.5
533,292 + CSW01_02655 0.67 +0.3
533,292 + CSW01_02655 0.67 -0.4
533,292 + CSW01_02655 0.67 +1.4
533,300 - CSW01_02655 0.69 -1.3
533,300 - CSW01_02655 0.69 -1.0
533,300 - CSW01_02655 0.69 -1.6
533,300 - CSW01_02655 0.69 -1.0
533,300 - CSW01_02655 0.69 +0.1
533,300 - CSW01_02655 0.69 -0.1
533,300 - CSW01_02655 0.69 -2.8
533,300 - CSW01_02655 0.69 -1.1
533,300 - CSW01_02655 0.69 +0.3
533,329 + CSW01_02655 0.74 +2.0
533,329 + CSW01_02655 0.74 -4.0
533,337 - CSW01_02655 0.76 -3.5
533,341 + CSW01_02655 0.77 +0.9
533,350 + CSW01_02655 0.78 +0.2
533,389 - CSW01_02655 0.86 +1.4
533,415 - -0.4
533,430 - -1.3
533,446 - -4.4
533,507 + +1.3
533,515 - +1.9
533,538 - -3.3
533,654 - -1.3
533,679 + -0.9
533,689 + +0.9
533,697 - -0.5
533,697 - -0.6
533,723 - +0.3
533,750 - +0.8
533,891 + CSW01_02660 0.63 +1.1
533,896 + CSW01_02660 0.65 +0.7
533,896 + CSW01_02660 0.65 -2.7
533,904 - CSW01_02660 0.68 +0.0
533,904 - CSW01_02660 0.68 +0.3
533,904 - CSW01_02660 0.68 -3.9
533,911 + CSW01_02660 0.71 -1.3
533,911 + CSW01_02660 0.71 -1.4
533,911 + CSW01_02660 0.71 -1.9
533,911 + CSW01_02660 0.71 +0.6
533,911 + CSW01_02660 0.71 -1.3
533,911 + CSW01_02660 0.71 -3.4
533,919 - CSW01_02660 0.74 +1.7
533,919 - CSW01_02660 0.74 +0.5
533,919 - CSW01_02660 0.74 -0.1
533,919 - CSW01_02660 0.74 +0.2
533,919 - CSW01_02660 0.74 +0.8
533,919 - CSW01_02660 0.74 +1.1
533,919 - CSW01_02660 0.74 +0.1
533,919 - CSW01_02660 0.74 -1.4
533,945 + CSW01_02660 0.85 +1.0
533,989 + -0.1
534,006 - +1.5
534,028 - +1.4
534,055 - +1.6
534,062 + -0.6
534,062 + +0.4
534,089 - +0.3
534,268 - -0.8
534,268 - +1.9
534,300 + CSW01_02665 0.11 +0.3
534,349 - CSW01_02665 0.15 -0.1
534,417 - CSW01_02665 0.20 +0.1
534,418 - CSW01_02665 0.20 +0.9
534,468 - CSW01_02665 0.24 +0.7
534,526 - CSW01_02665 0.29 -3.2
534,549 + CSW01_02665 0.31 -0.1
534,556 + CSW01_02665 0.31 +0.3
534,571 - CSW01_02665 0.32 +1.0
534,583 - CSW01_02665 0.33 +0.5
534,664 + CSW01_02665 0.40 -0.8
534,671 + CSW01_02665 0.40 +0.3
534,799 + CSW01_02665 0.50 -2.5
534,817 - CSW01_02665 0.51 +0.4
534,840 - CSW01_02665 0.53 +0.5
534,898 + CSW01_02665 0.58 +0.9
534,919 - CSW01_02665 0.59 -0.5
534,921 + CSW01_02665 0.60 +0.0
534,929 - CSW01_02665 0.60 -0.3
534,942 - CSW01_02665 0.61 -0.4
534,947 + CSW01_02665 0.62 +1.7
534,948 - CSW01_02665 0.62 -0.5
534,952 + CSW01_02665 0.62 -1.3
534,955 - CSW01_02665 0.62 -0.0

Or see this region's nucleotide sequence