Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02560

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02550 and CSW01_02555 are separated by 63 nucleotidesCSW01_02555 and CSW01_02560 are separated by 164 nucleotidesCSW01_02560 and CSW01_02565 are separated by 79 nucleotides CSW01_02550: CSW01_02550 - mechanosensitive ion channel protein, at 509,517 to 510,380 _02550 CSW01_02555: CSW01_02555 - amino acid transporter, at 510,444 to 511,079 _02555 CSW01_02560: CSW01_02560 - chromosome initiation inhibitor, at 511,244 to 512,140 _02560 CSW01_02565: CSW01_02565 - oxidative stress defense protein, at 512,220 to 512,936 _02565 Position (kb) 511 512 513Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 510.254 kb on + strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.262 kb on - strand, within CSW01_02550at 510.269 kb on + strand, within CSW01_02550at 510.271 kb on + strand, within CSW01_02550at 510.276 kb on + strand, within CSW01_02550at 510.279 kb on + strand, within CSW01_02550at 510.393 kb on + strandat 510.544 kb on + strand, within CSW01_02555at 510.552 kb on - strand, within CSW01_02555at 510.706 kb on + strand, within CSW01_02555at 510.865 kb on + strand, within CSW01_02555at 510.904 kb on - strand, within CSW01_02555at 510.941 kb on + strand, within CSW01_02555at 511.048 kb on - strandat 511.106 kb on + strandat 511.114 kb on - strandat 511.274 kb on + strandat 511.282 kb on - strandat 511.364 kb on - strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.391 kb on + strand, within CSW01_02560at 511.399 kb on - strand, within CSW01_02560at 511.401 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.424 kb on - strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.579 kb on + strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.582 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.587 kb on - strand, within CSW01_02560at 511.604 kb on + strand, within CSW01_02560at 511.621 kb on + strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.629 kb on - strand, within CSW01_02560at 511.664 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.708 kb on + strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.716 kb on - strand, within CSW01_02560at 511.736 kb on + strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.796 kb on - strand, within CSW01_02560at 511.833 kb on - strand, within CSW01_02560at 511.875 kb on + strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.903 kb on - strand, within CSW01_02560at 511.935 kb on + strand, within CSW01_02560at 511.943 kb on - strand, within CSW01_02560at 511.954 kb on + strand, within CSW01_02560at 511.968 kb on - strand, within CSW01_02560at 512.001 kb on + strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.009 kb on - strand, within CSW01_02560at 512.069 kb on + strandat 512.112 kb on - strandat 512.148 kb on + strandat 512.156 kb on - strandat 512.156 kb on - strandat 512.156 kb on - strandat 512.191 kb on - strandat 512.209 kb on - strandat 512.224 kb on - strandat 512.224 kb on - strandat 512.363 kb on - strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.429 kb on + strand, within CSW01_02565at 512.525 kb on + strand, within CSW01_02565at 512.548 kb on - strand, within CSW01_02565at 512.590 kb on + strand, within CSW01_02565at 512.654 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.735 kb on + strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.743 kb on - strand, within CSW01_02565at 512.755 kb on - strand, within CSW01_02565at 512.761 kb on - strand, within CSW01_02565at 512.812 kb on + strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.820 kb on - strand, within CSW01_02565at 512.872 kb on + strandat 512.932 kb on - strandat 512.964 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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510,254 + CSW01_02550 0.85 +0.7
510,262 - CSW01_02550 0.86 -0.0
510,262 - CSW01_02550 0.86 +0.3
510,262 - CSW01_02550 0.86 -2.5
510,269 + CSW01_02550 0.87 +1.1
510,271 + CSW01_02550 0.87 -2.3
510,276 + CSW01_02550 0.88 +1.5
510,279 + CSW01_02550 0.88 -1.4
510,393 + -0.4
510,544 + CSW01_02555 0.16 -1.1
510,552 - CSW01_02555 0.17 +1.2
510,706 + CSW01_02555 0.41 -0.7
510,865 + CSW01_02555 0.66 +1.5
510,904 - CSW01_02555 0.72 +0.3
510,941 + CSW01_02555 0.78 -1.1
511,048 - +0.3
511,106 + +0.5
511,114 - -0.1
511,274 + -1.1
511,282 - -2.6
511,364 - CSW01_02560 0.13 +0.5
511,391 + CSW01_02560 0.16 -2.8
511,391 + CSW01_02560 0.16 -0.5
511,391 + CSW01_02560 0.16 -1.0
511,391 + CSW01_02560 0.16 -0.8
511,391 + CSW01_02560 0.16 -0.5
511,399 - CSW01_02560 0.17 +0.3
511,401 - CSW01_02560 0.18 -3.4
511,424 - CSW01_02560 0.20 +0.7
511,424 - CSW01_02560 0.20 -0.2
511,579 + CSW01_02560 0.37 +0.0
511,579 + CSW01_02560 0.37 +0.0
511,579 + CSW01_02560 0.37 -1.4
511,582 - CSW01_02560 0.38 +1.3
511,582 - CSW01_02560 0.38 -0.5
511,582 - CSW01_02560 0.38 -0.1
511,587 - CSW01_02560 0.38 +0.0
511,587 - CSW01_02560 0.38 -3.7
511,587 - CSW01_02560 0.38 -0.1
511,587 - CSW01_02560 0.38 -3.3
511,587 - CSW01_02560 0.38 +1.0
511,587 - CSW01_02560 0.38 -0.0
511,604 + CSW01_02560 0.40 +0.6
511,621 + CSW01_02560 0.42 +0.8
511,629 - CSW01_02560 0.43 +1.2
511,629 - CSW01_02560 0.43 +0.6
511,664 + CSW01_02560 0.47 -0.0
511,708 + CSW01_02560 0.52 -1.1
511,708 + CSW01_02560 0.52 -0.4
511,708 + CSW01_02560 0.52 +0.6
511,708 + CSW01_02560 0.52 +0.6
511,716 - CSW01_02560 0.53 -1.1
511,716 - CSW01_02560 0.53 -0.9
511,736 + CSW01_02560 0.55 +1.8
511,796 - CSW01_02560 0.62 +1.8
511,796 - CSW01_02560 0.62 -0.2
511,833 - CSW01_02560 0.66 -0.9
511,875 + CSW01_02560 0.70 -2.5
511,903 - CSW01_02560 0.73 +0.1
511,903 - CSW01_02560 0.73 +0.4
511,935 + CSW01_02560 0.77 -3.7
511,943 - CSW01_02560 0.78 -0.2
511,954 + CSW01_02560 0.79 +1.1
511,968 - CSW01_02560 0.81 -3.8
512,001 + CSW01_02560 0.84 +1.3
512,009 - CSW01_02560 0.85 -0.0
512,009 - CSW01_02560 0.85 +0.4
512,069 + -2.1
512,112 - -3.1
512,148 + -1.6
512,156 - -2.6
512,156 - +0.1
512,156 - +0.2
512,191 - -3.7
512,209 - -2.4
512,224 - -3.2
512,224 - +0.5
512,363 - CSW01_02565 0.20 -1.4
512,429 + CSW01_02565 0.29 -2.9
512,429 + CSW01_02565 0.29 -0.8
512,429 + CSW01_02565 0.29 -1.6
512,525 + CSW01_02565 0.43 +0.5
512,548 - CSW01_02565 0.46 +0.0
512,590 + CSW01_02565 0.52 -0.9
512,654 + CSW01_02565 0.61 -2.8
512,735 + CSW01_02565 0.72 +1.0
512,735 + CSW01_02565 0.72 -0.7
512,735 + CSW01_02565 0.72 +0.1
512,743 - CSW01_02565 0.73 -0.2
512,743 - CSW01_02565 0.73 -0.9
512,743 - CSW01_02565 0.73 -1.6
512,755 - CSW01_02565 0.75 -3.5
512,761 - CSW01_02565 0.75 +2.5
512,812 + CSW01_02565 0.83 +1.1
512,820 - CSW01_02565 0.84 +0.3
512,820 - CSW01_02565 0.84 -2.4
512,820 - CSW01_02565 0.84 -3.2
512,820 - CSW01_02565 0.84 +0.9
512,820 - CSW01_02565 0.84 +1.5
512,820 - CSW01_02565 0.84 +1.4
512,872 + -2.1
512,932 - -1.0
512,964 - +2.3

Or see this region's nucleotide sequence