Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02520

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02515 and CSW01_02520 are separated by 71 nucleotidesCSW01_02520 and CSW01_02525 are separated by 144 nucleotides CSW01_02515: CSW01_02515 - transketolase, at 500,345 to 502,429 _02515 CSW01_02520: CSW01_02520 - iron-regulated virulence regulatory protein IrgB, at 502,501 to 503,397 _02520 CSW01_02525: CSW01_02525 - iron-regulated outer membrane virulence protein, at 503,542 to 505,500 _02525 Position (kb) 502 503 504Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 501.830 kb on - strand, within CSW01_02515at 501.903 kb on + strand, within CSW01_02515at 501.958 kb on + strand, within CSW01_02515at 501.999 kb on + strand, within CSW01_02515at 502.071 kb on + strand, within CSW01_02515at 502.104 kb on - strand, within CSW01_02515at 502.115 kb on - strand, within CSW01_02515at 502.144 kb on + strand, within CSW01_02515at 502.144 kb on + strand, within CSW01_02515at 502.156 kb on + strand, within CSW01_02515at 502.325 kb on + strandat 502.528 kb on + strandat 502.554 kb on + strandat 502.571 kb on - strandat 502.578 kb on + strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.586 kb on - strandat 502.629 kb on + strand, within CSW01_02520at 502.629 kb on + strand, within CSW01_02520at 502.637 kb on - strand, within CSW01_02520at 502.637 kb on - strand, within CSW01_02520at 502.647 kb on - strand, within CSW01_02520at 502.671 kb on + strand, within CSW01_02520at 502.686 kb on + strand, within CSW01_02520at 502.699 kb on + strand, within CSW01_02520at 502.700 kb on + strand, within CSW01_02520at 502.731 kb on + strand, within CSW01_02520at 502.751 kb on - strand, within CSW01_02520at 502.753 kb on + strand, within CSW01_02520at 502.757 kb on + strand, within CSW01_02520at 502.758 kb on - strand, within CSW01_02520at 502.775 kb on + strand, within CSW01_02520at 502.775 kb on - strand, within CSW01_02520at 502.859 kb on - strand, within CSW01_02520at 502.900 kb on + strand, within CSW01_02520at 502.924 kb on + strand, within CSW01_02520at 502.932 kb on - strand, within CSW01_02520at 502.932 kb on - strand, within CSW01_02520at 502.953 kb on - strand, within CSW01_02520at 502.993 kb on + strand, within CSW01_02520at 503.001 kb on - strand, within CSW01_02520at 503.052 kb on + strand, within CSW01_02520at 503.052 kb on + strand, within CSW01_02520at 503.060 kb on - strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.067 kb on + strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.075 kb on - strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.187 kb on + strand, within CSW01_02520at 503.224 kb on - strand, within CSW01_02520at 503.257 kb on + strand, within CSW01_02520at 503.257 kb on + strand, within CSW01_02520at 503.265 kb on - strand, within CSW01_02520at 503.301 kb on + strand, within CSW01_02520at 503.301 kb on + strand, within CSW01_02520at 503.305 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.306 kb on + strand, within CSW01_02520at 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.314 kb on - strandat 503.316 kb on + strandat 503.316 kb on + strandat 503.324 kb on - strandat 503.352 kb on - strandat 503.372 kb on + strandat 503.457 kb on - strandat 503.457 kb on - strandat 503.544 kb on + strandat 503.549 kb on + strandat 503.557 kb on - strandat 503.590 kb on - strandat 503.635 kb on + strandat 503.649 kb on + strandat 503.696 kb on + strandat 503.706 kb on + strandat 503.738 kb on + strand, within CSW01_02525at 503.746 kb on - strand, within CSW01_02525at 503.820 kb on + strand, within CSW01_02525at 503.835 kb on - strand, within CSW01_02525at 503.835 kb on - strand, within CSW01_02525at 503.847 kb on - strand, within CSW01_02525at 503.862 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.875 kb on + strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.883 kb on - strand, within CSW01_02525at 503.892 kb on - strand, within CSW01_02525at 503.919 kb on - strand, within CSW01_02525at 503.995 kb on - strand, within CSW01_02525at 503.995 kb on - strand, within CSW01_02525at 503.995 kb on - strand, within CSW01_02525at 504.034 kb on + strand, within CSW01_02525at 504.039 kb on - strand, within CSW01_02525at 504.233 kb on + strand, within CSW01_02525at 504.233 kb on + strand, within CSW01_02525at 504.235 kb on - strand, within CSW01_02525at 504.235 kb on - strand, within CSW01_02525at 504.235 kb on - strand, within CSW01_02525at 504.235 kb on - strand, within CSW01_02525at 504.248 kb on - strand, within CSW01_02525at 504.252 kb on + strand, within CSW01_02525at 504.252 kb on + strand, within CSW01_02525at 504.295 kb on + strand, within CSW01_02525at 504.295 kb on + strand, within CSW01_02525at 504.303 kb on - strand, within CSW01_02525at 504.326 kb on - strand, within CSW01_02525at 504.333 kb on + strand, within CSW01_02525

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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501,830 - CSW01_02515 0.71 -0.0
501,903 + CSW01_02515 0.75 +0.5
501,958 + CSW01_02515 0.77 +0.1
501,999 + CSW01_02515 0.79 -2.1
502,071 + CSW01_02515 0.83 +1.0
502,104 - CSW01_02515 0.84 +0.3
502,115 - CSW01_02515 0.85 +1.0
502,144 + CSW01_02515 0.86 -0.9
502,144 + CSW01_02515 0.86 +0.4
502,156 + CSW01_02515 0.87 +0.7
502,325 + -1.3
502,528 + +0.2
502,554 + +1.2
502,571 - -1.4
502,578 + -2.0
502,586 - -0.9
502,586 - -0.7
502,586 - +2.4
502,586 - +0.3
502,629 + CSW01_02520 0.14 -0.7
502,629 + CSW01_02520 0.14 +0.9
502,637 - CSW01_02520 0.15 -1.2
502,637 - CSW01_02520 0.15 -1.7
502,647 - CSW01_02520 0.16 +0.1
502,671 + CSW01_02520 0.19 +0.8
502,686 + CSW01_02520 0.21 -2.2
502,699 + CSW01_02520 0.22 -2.7
502,700 + CSW01_02520 0.22 +0.4
502,731 + CSW01_02520 0.26 +1.5
502,751 - CSW01_02520 0.28 -0.3
502,753 + CSW01_02520 0.28 -1.2
502,757 + CSW01_02520 0.29 -0.6
502,758 - CSW01_02520 0.29 +1.7
502,775 + CSW01_02520 0.31 +0.9
502,775 - CSW01_02520 0.31 -3.0
502,859 - CSW01_02520 0.40 -1.4
502,900 + CSW01_02520 0.44 +1.1
502,924 + CSW01_02520 0.47 -0.4
502,932 - CSW01_02520 0.48 -2.5
502,932 - CSW01_02520 0.48 +0.0
502,953 - CSW01_02520 0.50 -0.9
502,993 + CSW01_02520 0.55 -1.7
503,001 - CSW01_02520 0.56 +0.5
503,052 + CSW01_02520 0.61 -1.7
503,052 + CSW01_02520 0.61 +0.9
503,060 - CSW01_02520 0.62 +0.1
503,067 + CSW01_02520 0.63 +1.0
503,067 + CSW01_02520 0.63 +2.0
503,067 + CSW01_02520 0.63 +0.8
503,075 - CSW01_02520 0.64 -4.1
503,075 - CSW01_02520 0.64 +1.1
503,075 - CSW01_02520 0.64 -1.0
503,075 - CSW01_02520 0.64 -2.4
503,187 + CSW01_02520 0.76 -2.8
503,187 + CSW01_02520 0.76 +0.9
503,187 + CSW01_02520 0.76 +0.9
503,224 - CSW01_02520 0.81 -2.1
503,257 + CSW01_02520 0.84 -0.9
503,257 + CSW01_02520 0.84 +0.2
503,265 - CSW01_02520 0.85 -0.3
503,301 + CSW01_02520 0.89 -1.0
503,301 + CSW01_02520 0.89 -1.0
503,305 + CSW01_02520 0.90 -3.3
503,306 + CSW01_02520 0.90 -0.9
503,306 + CSW01_02520 0.90 -0.3
503,306 + CSW01_02520 0.90 +1.0
503,306 + CSW01_02520 0.90 -0.1
503,306 + CSW01_02520 0.90 -2.8
503,306 + CSW01_02520 0.90 +0.6
503,306 + CSW01_02520 0.90 +1.3
503,306 + CSW01_02520 0.90 +1.5
503,314 - -4.3
503,314 - +1.4
503,314 - +1.9
503,314 - +0.0
503,314 - -2.9
503,314 - -4.2
503,314 - -0.0
503,316 + +1.8
503,316 + -0.2
503,324 - -4.1
503,352 - +1.0
503,372 + -1.7
503,457 - +0.6
503,457 - -0.5
503,544 + -3.7
503,549 + +1.7
503,557 - +0.8
503,590 - -3.2
503,635 + -1.6
503,649 + -0.3
503,696 + +1.7
503,706 + -0.3
503,738 + CSW01_02525 0.10 -0.1
503,746 - CSW01_02525 0.10 +1.0
503,820 + CSW01_02525 0.14 +0.9
503,835 - CSW01_02525 0.15 +1.3
503,835 - CSW01_02525 0.15 +0.5
503,847 - CSW01_02525 0.16 -0.3
503,862 + CSW01_02525 0.16 -1.3
503,875 + CSW01_02525 0.17 -2.1
503,875 + CSW01_02525 0.17 +0.9
503,875 + CSW01_02525 0.17 +1.5
503,875 + CSW01_02525 0.17 -1.6
503,875 + CSW01_02525 0.17 +0.6
503,875 + CSW01_02525 0.17 +1.5
503,883 - CSW01_02525 0.17 +0.8
503,883 - CSW01_02525 0.17 +0.5
503,883 - CSW01_02525 0.17 +0.8
503,883 - CSW01_02525 0.17 -1.1
503,883 - CSW01_02525 0.17 +1.3
503,883 - CSW01_02525 0.17 +1.3
503,883 - CSW01_02525 0.17 -3.8
503,892 - CSW01_02525 0.18 -2.4
503,919 - CSW01_02525 0.19 +0.5
503,995 - CSW01_02525 0.23 -1.6
503,995 - CSW01_02525 0.23 -2.5
503,995 - CSW01_02525 0.23 -0.6
504,034 + CSW01_02525 0.25 +0.0
504,039 - CSW01_02525 0.25 -0.6
504,233 + CSW01_02525 0.35 +0.3
504,233 + CSW01_02525 0.35 -2.4
504,235 - CSW01_02525 0.35 -1.4
504,235 - CSW01_02525 0.35 -0.3
504,235 - CSW01_02525 0.35 -1.9
504,235 - CSW01_02525 0.35 +1.4
504,248 - CSW01_02525 0.36 +0.3
504,252 + CSW01_02525 0.36 -1.0
504,252 + CSW01_02525 0.36 +1.2
504,295 + CSW01_02525 0.38 +1.9
504,295 + CSW01_02525 0.38 -2.6
504,303 - CSW01_02525 0.39 +0.4
504,326 - CSW01_02525 0.40 +1.1
504,333 + CSW01_02525 0.40 -3.3

Or see this region's nucleotide sequence