Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02510

Experiment: ICP1_phage_0.23_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02500 and CSW01_02505 are separated by 127 nucleotidesCSW01_02505 and CSW01_02510 are separated by 121 nucleotidesCSW01_02510 and CSW01_02515 are separated by 277 nucleotides CSW01_02500: CSW01_02500 - deoxyribonuclease, at 497,477 to 498,172 _02500 CSW01_02505: CSW01_02505 - SprT family protein, at 498,300 to 498,788 _02505 CSW01_02510: CSW01_02510 - S-adenosylmethionine synthase, at 498,910 to 500,067 _02510 CSW01_02515: CSW01_02515 - transketolase, at 500,345 to 502,429 _02515 Position (kb) 498 499 500 501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 497.919 kb on + strand, within CSW01_02500at 497.926 kb on - strand, within CSW01_02500at 497.927 kb on - strand, within CSW01_02500at 497.974 kb on + strand, within CSW01_02500at 497.982 kb on - strand, within CSW01_02500at 498.084 kb on + strand, within CSW01_02500at 498.119 kb on + strandat 498.119 kb on + strandat 498.127 kb on - strandat 498.203 kb on + strandat 498.211 kb on - strandat 498.211 kb on - strandat 498.257 kb on + strandat 498.290 kb on - strandat 498.305 kb on - strandat 498.339 kb on + strandat 498.360 kb on - strand, within CSW01_02505at 498.364 kb on + strand, within CSW01_02505at 498.385 kb on - strand, within CSW01_02505at 498.424 kb on + strand, within CSW01_02505at 498.429 kb on + strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.432 kb on - strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.434 kb on + strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.442 kb on - strand, within CSW01_02505at 498.485 kb on - strand, within CSW01_02505at 498.524 kb on - strand, within CSW01_02505at 498.646 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.698 kb on + strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.706 kb on - strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.711 kb on + strand, within CSW01_02505at 498.758 kb on + strandat 498.758 kb on + strandat 498.760 kb on + strandat 498.760 kb on + strandat 498.768 kb on - strandat 498.768 kb on - strandat 498.776 kb on - strandat 498.855 kb on + strandat 500.336 kb on - strandat 500.416 kb on + strandat 500.416 kb on + strandat 500.436 kb on - strandat 500.455 kb on - strandat 500.462 kb on + strandat 500.617 kb on + strand, within CSW01_02515at 500.641 kb on + strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.675 kb on - strand, within CSW01_02515at 500.713 kb on + strand, within CSW01_02515at 500.730 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.735 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.742 kb on + strand, within CSW01_02515at 500.789 kb on - strand, within CSW01_02515at 500.794 kb on - strand, within CSW01_02515at 500.828 kb on - strand, within CSW01_02515at 500.870 kb on - strand, within CSW01_02515at 500.882 kb on + strand, within CSW01_02515at 500.884 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.946 kb on + strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 500.954 kb on - strand, within CSW01_02515at 501.016 kb on - strand, within CSW01_02515at 501.042 kb on + strand, within CSW01_02515at 501.042 kb on + strand, within CSW01_02515at 501.057 kb on + strand, within CSW01_02515

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1
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497,919 + CSW01_02500 0.64 -0.9
497,926 - CSW01_02500 0.65 +1.6
497,927 - CSW01_02500 0.65 -0.1
497,974 + CSW01_02500 0.71 +0.4
497,982 - CSW01_02500 0.73 +0.8
498,084 + CSW01_02500 0.87 +1.4
498,119 + +0.6
498,119 + +2.0
498,127 - +0.9
498,203 + +0.3
498,211 - +1.2
498,211 - -0.6
498,257 + -1.6
498,290 - -0.7
498,305 - +1.0
498,339 + +1.0
498,360 - CSW01_02505 0.12 -0.3
498,364 + CSW01_02505 0.13 +0.5
498,385 - CSW01_02505 0.17 +0.8
498,424 + CSW01_02505 0.25 +0.0
498,429 + CSW01_02505 0.26 +0.8
498,432 - CSW01_02505 0.27 +0.9
498,432 - CSW01_02505 0.27 +0.1
498,432 - CSW01_02505 0.27 -2.0
498,434 + CSW01_02505 0.27 +0.7
498,434 + CSW01_02505 0.27 +2.3
498,434 + CSW01_02505 0.27 +0.3
498,434 + CSW01_02505 0.27 +1.2
498,434 + CSW01_02505 0.27 -0.9
498,434 + CSW01_02505 0.27 -1.6
498,442 - CSW01_02505 0.29 +1.0
498,442 - CSW01_02505 0.29 -2.4
498,442 - CSW01_02505 0.29 +0.8
498,442 - CSW01_02505 0.29 +0.7
498,442 - CSW01_02505 0.29 +1.4
498,442 - CSW01_02505 0.29 +0.2
498,485 - CSW01_02505 0.38 -1.5
498,524 - CSW01_02505 0.46 -2.4
498,646 + CSW01_02505 0.71 +1.9
498,698 + CSW01_02505 0.81 +1.9
498,698 + CSW01_02505 0.81 +1.2
498,698 + CSW01_02505 0.81 -1.6
498,698 + CSW01_02505 0.81 -1.3
498,698 + CSW01_02505 0.81 -0.3
498,698 + CSW01_02505 0.81 +5.1
498,698 + CSW01_02505 0.81 +0.9
498,698 + CSW01_02505 0.81 +0.4
498,706 - CSW01_02505 0.83 +0.6
498,706 - CSW01_02505 0.83 -1.2
498,706 - CSW01_02505 0.83 +0.4
498,706 - CSW01_02505 0.83 -0.8
498,706 - CSW01_02505 0.83 -0.2
498,706 - CSW01_02505 0.83 -3.7
498,706 - CSW01_02505 0.83 +0.8
498,706 - CSW01_02505 0.83 +0.5
498,706 - CSW01_02505 0.83 +0.8
498,706 - CSW01_02505 0.83 +1.2
498,706 - CSW01_02505 0.83 +1.0
498,706 - CSW01_02505 0.83 -2.3
498,706 - CSW01_02505 0.83 -2.3
498,711 + CSW01_02505 0.84 +0.2
498,711 + CSW01_02505 0.84 -0.7
498,758 + -0.3
498,758 + -3.6
498,760 + +0.1
498,760 + +0.1
498,768 - +1.5
498,768 - +0.5
498,776 - +0.9
498,855 + -3.9
500,336 - +1.5
500,416 + -2.8
500,416 + +2.0
500,436 - -0.4
500,455 - +0.3
500,462 + -2.6
500,617 + CSW01_02515 0.13 -2.7
500,641 + CSW01_02515 0.14 -1.8
500,675 - CSW01_02515 0.16 +0.9
500,675 - CSW01_02515 0.16 +1.1
500,675 - CSW01_02515 0.16 +0.9
500,675 - CSW01_02515 0.16 +0.6
500,675 - CSW01_02515 0.16 +0.1
500,675 - CSW01_02515 0.16 +0.6
500,675 - CSW01_02515 0.16 +0.0
500,675 - CSW01_02515 0.16 +0.2
500,675 - CSW01_02515 0.16 -1.9
500,675 - CSW01_02515 0.16 +1.8
500,713 + CSW01_02515 0.18 +0.3
500,730 + CSW01_02515 0.18 -3.9
500,735 + CSW01_02515 0.19 +0.1
500,735 + CSW01_02515 0.19 -1.2
500,735 + CSW01_02515 0.19 -0.2
500,742 + CSW01_02515 0.19 +0.1
500,742 + CSW01_02515 0.19 -1.4
500,742 + CSW01_02515 0.19 -0.7
500,789 - CSW01_02515 0.21 +0.5
500,794 - CSW01_02515 0.22 -2.1
500,828 - CSW01_02515 0.23 +1.6
500,870 - CSW01_02515 0.25 +2.0
500,882 + CSW01_02515 0.26 -2.4
500,884 + CSW01_02515 0.26 +2.4
500,946 + CSW01_02515 0.29 +0.4
500,946 + CSW01_02515 0.29 -0.5
500,946 + CSW01_02515 0.29 -0.9
500,946 + CSW01_02515 0.29 -0.3
500,946 + CSW01_02515 0.29 -2.7
500,946 + CSW01_02515 0.29 +0.6
500,954 - CSW01_02515 0.29 +0.4
500,954 - CSW01_02515 0.29 -3.4
500,954 - CSW01_02515 0.29 -2.5
500,954 - CSW01_02515 0.29 -2.1
500,954 - CSW01_02515 0.29 -2.8
500,954 - CSW01_02515 0.29 +1.3
501,016 - CSW01_02515 0.32 -2.0
501,042 + CSW01_02515 0.33 +1.0
501,042 + CSW01_02515 0.33 +0.9
501,057 + CSW01_02515 0.34 +0.5

Or see this region's nucleotide sequence