Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01955 and CSW01_01960 are separated by 82 nucleotides CSW01_01960 and CSW01_01965 are separated by 284 nucleotides
CSW01_01955: CSW01_01955 - alanine racemase, at 386,713 to 387,840
_01955
CSW01_01960: CSW01_01960 - hypothetical protein, at 387,923 to 388,342
_01960
CSW01_01965: CSW01_01965 - glucose-6-phosphate isomerase, at 388,627 to 390,279
_01965
Position (kb) 387
388
389 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 387.834 kb on + strand at 387.844 kb on + strand at 387.844 kb on + strand at 387.844 kb on + strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.852 kb on - strand at 387.867 kb on - strand at 387.904 kb on + strand at 387.912 kb on - strand at 387.979 kb on + strand, within CSW01_01960 at 387.979 kb on + strand, within CSW01_01960 at 388.009 kb on + strand, within CSW01_01960 at 388.009 kb on + strand, within CSW01_01960 at 388.017 kb on - strand, within CSW01_01960 at 388.064 kb on + strand, within CSW01_01960 at 388.064 kb on - strand, within CSW01_01960 at 388.065 kb on - strand, within CSW01_01960 at 388.070 kb on - strand, within CSW01_01960 at 388.070 kb on - strand, within CSW01_01960 at 388.103 kb on - strand, within CSW01_01960 at 388.124 kb on + strand, within CSW01_01960 at 388.147 kb on - strand, within CSW01_01960 at 388.224 kb on - strand, within CSW01_01960 at 388.291 kb on + strand, within CSW01_01960 at 388.291 kb on + strand, within CSW01_01960 at 388.299 kb on - strand, within CSW01_01960 at 388.299 kb on - strand, within CSW01_01960 at 388.318 kb on + strand at 388.326 kb on - strand at 388.361 kb on - strand at 388.361 kb on - strand at 388.372 kb on + strand at 388.377 kb on + strand at 388.380 kb on - strand at 388.385 kb on - strand at 388.385 kb on - strand at 388.390 kb on + strand at 388.432 kb on + strand at 388.467 kb on - strand at 388.480 kb on + strand at 388.616 kb on + strand at 388.619 kb on - strand at 388.693 kb on + strand at 388.816 kb on + strand, within CSW01_01965 at 388.875 kb on + strand, within CSW01_01965 at 388.917 kb on + strand, within CSW01_01965 at 388.923 kb on - strand, within CSW01_01965 at 388.923 kb on - strand, within CSW01_01965 at 388.940 kb on - strand, within CSW01_01965 at 389.031 kb on + strand, within CSW01_01965 at 389.039 kb on - strand, within CSW01_01965 at 389.194 kb on - strand, within CSW01_01965
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 387,834 + +1.2 387,844 + -1.9 387,844 + -1.4 387,844 + +0.8 387,852 - +1.7 387,852 - -0.1 387,852 - -1.1 387,852 - +1.0 387,852 - -2.4 387,852 - +0.4 387,852 - +0.3 387,867 - -2.3 387,904 + -0.5 387,912 - +0.9 387,979 + CSW01_01960 0.13 +0.8 387,979 + CSW01_01960 0.13 -2.7 388,009 + CSW01_01960 0.20 -1.7 388,009 + CSW01_01960 0.20 +3.2 388,017 - CSW01_01960 0.22 -0.2 388,064 + CSW01_01960 0.34 -1.8 388,064 - CSW01_01960 0.34 +0.5 388,065 - CSW01_01960 0.34 +1.8 388,070 - CSW01_01960 0.35 +2.8 388,070 - CSW01_01960 0.35 +1.4 388,103 - CSW01_01960 0.43 -0.0 388,124 + CSW01_01960 0.48 -4.3 388,147 - CSW01_01960 0.53 -1.3 388,224 - CSW01_01960 0.72 +1.8 388,291 + CSW01_01960 0.88 +0.7 388,291 + CSW01_01960 0.88 +3.1 388,299 - CSW01_01960 0.90 -0.4 388,299 - CSW01_01960 0.90 -0.9 388,318 + -0.6 388,326 - -0.2 388,361 - +1.1 388,361 - +0.9 388,372 + -1.2 388,377 + -0.2 388,380 - -0.2 388,385 - -1.2 388,385 - -1.4 388,390 + +0.8 388,432 + -1.7 388,467 - -1.7 388,480 + +0.3 388,616 + -4.0 388,619 - -3.2 388,693 + -1.3 388,816 + CSW01_01965 0.11 -0.9 388,875 + CSW01_01965 0.15 -0.7 388,917 + CSW01_01965 0.18 +1.8 388,923 - CSW01_01965 0.18 -0.9 388,923 - CSW01_01965 0.18 +2.9 388,940 - CSW01_01965 0.19 -2.1 389,031 + CSW01_01965 0.24 +4.1 389,039 - CSW01_01965 0.25 -1.9 389,194 - CSW01_01965 0.34 -1.5
Or see this region's nucleotide sequence