Experiment: ICP1_phage_0.23_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01830 and CSW01_01835 are separated by 171 nucleotides CSW01_01835 and CSW01_01840 are separated by 32 nucleotides
CSW01_01830: CSW01_01830 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 367,771 to 368,718
_01830
CSW01_01835: CSW01_01835 - RNA-binding protein Hfq, at 368,890 to 369,153
_01835
CSW01_01840: CSW01_01840 - GTPase HflX, at 369,186 to 370,475
_01840
Position (kb) 368
369
370 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 367.967 kb on - strand, within CSW01_01830 at 368.052 kb on + strand, within CSW01_01830 at 368.106 kb on - strand, within CSW01_01830 at 368.220 kb on + strand, within CSW01_01830 at 368.347 kb on + strand, within CSW01_01830 at 368.378 kb on + strand, within CSW01_01830 at 368.378 kb on + strand, within CSW01_01830 at 368.386 kb on - strand, within CSW01_01830 at 368.453 kb on - strand, within CSW01_01830 at 368.629 kb on - strand at 368.637 kb on - strand at 368.637 kb on - strand at 368.720 kb on - strand at 368.779 kb on - strand at 368.906 kb on - strand at 368.908 kb on + strand at 368.983 kb on - strand, within CSW01_01835 at 369.143 kb on + strand at 369.264 kb on - strand at 369.299 kb on + strand at 369.299 kb on + strand at 369.307 kb on - strand at 369.338 kb on - strand, within CSW01_01840 at 369.365 kb on + strand, within CSW01_01840 at 369.373 kb on - strand, within CSW01_01840 at 369.433 kb on + strand, within CSW01_01840 at 369.498 kb on + strand, within CSW01_01840 at 369.498 kb on + strand, within CSW01_01840 at 369.506 kb on - strand, within CSW01_01840 at 369.506 kb on - strand, within CSW01_01840 at 369.507 kb on - strand, within CSW01_01840 at 369.575 kb on + strand, within CSW01_01840 at 369.636 kb on + strand, within CSW01_01840 at 369.639 kb on - strand, within CSW01_01840 at 369.644 kb on - strand, within CSW01_01840 at 369.662 kb on + strand, within CSW01_01840 at 369.744 kb on - strand, within CSW01_01840 at 369.803 kb on - strand, within CSW01_01840 at 369.814 kb on + strand, within CSW01_01840 at 369.846 kb on + strand, within CSW01_01840 at 369.891 kb on - strand, within CSW01_01840 at 369.921 kb on - strand, within CSW01_01840
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_0.23_MOI_rep1 remove 367,967 - CSW01_01830 0.21 +3.5 368,052 + CSW01_01830 0.30 +3.3 368,106 - CSW01_01830 0.35 +0.7 368,220 + CSW01_01830 0.47 +3.7 368,347 + CSW01_01830 0.61 +3.0 368,378 + CSW01_01830 0.64 +3.5 368,378 + CSW01_01830 0.64 +3.0 368,386 - CSW01_01830 0.65 +3.5 368,453 - CSW01_01830 0.72 +3.7 368,629 - +3.7 368,637 - +3.7 368,637 - +3.0 368,720 - +1.5 368,779 - -2.3 368,906 - -1.9 368,908 + -1.1 368,983 - CSW01_01835 0.35 -1.7 369,143 + -2.5 369,264 - -1.1 369,299 + -3.3 369,299 + -2.6 369,307 - -2.7 369,338 - CSW01_01840 0.12 -1.7 369,365 + CSW01_01840 0.14 +1.6 369,373 - CSW01_01840 0.14 -1.3 369,433 + CSW01_01840 0.19 -0.3 369,498 + CSW01_01840 0.24 +0.8 369,498 + CSW01_01840 0.24 -1.4 369,506 - CSW01_01840 0.25 -1.9 369,506 - CSW01_01840 0.25 -1.5 369,507 - CSW01_01840 0.25 +0.3 369,575 + CSW01_01840 0.30 +0.9 369,636 + CSW01_01840 0.35 -4.7 369,639 - CSW01_01840 0.35 -2.9 369,644 - CSW01_01840 0.36 +2.1 369,662 + CSW01_01840 0.37 -0.7 369,744 - CSW01_01840 0.43 +0.1 369,803 - CSW01_01840 0.48 +0.8 369,814 + CSW01_01840 0.49 +0.4 369,846 + CSW01_01840 0.51 -2.5 369,891 - CSW01_01840 0.55 -2.8 369,921 - CSW01_01840 0.57 -2.1
Or see this region's nucleotide sequence